View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk507-E42 (Length: 243)
Name: R108-tnk507-E42
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk507-E42 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29822493 - 29822255
Alignment:
| Q |
1 |
cctccatgtttcatccacaatcatcgtaccaattttatgttaagttcctcaagactcagttatggtcacactcacactctttactattctcaccaaagat |
100 |
Q |
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| T |
29822493 |
cctccatgtttcatccacaatcatcgtaccaattttatgttcagttcctcaagactcagttatggtcacactcacactctttactattctcaccaaagat |
29822394 |
T |
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| Q |
101 |
cttctgttcccactattgtttgttctgcttccaataaaccatctacttctcctcaaattaggtaccctttttctctcctatgaaaaacatatttggttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29822393 |
cttctgttcccactattgtttgttctgcttccaataaaccatctacttctcctcaaattaggtaccctttttctctcctatgaaaaacatatttggttat |
29822294 |
T |
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| Q |
201 |
gaggtgattttagaatgtttgtttcttaantttgatatg |
239 |
Q |
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||||||||||||||||||||||||||||| || |||||| |
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| T |
29822293 |
gaggtgattttagaatgtttgtttcttaatttcgatatg |
29822255 |
T |
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