View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_473 (Length: 204)

Name: NF9795A_low_473
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_473
NF9795A_low_473
[»] scaffold0036 (1 HSPs)
scaffold0036 (86-188)||(50171-50273)
[»] scaffold0380 (1 HSPs)
scaffold0380 (86-197)||(14536-14647)
[»] scaffold0159 (1 HSPs)
scaffold0159 (86-188)||(33199-33299)
[»] chr2 (3 HSPs)
chr2 (86-188)||(5788826-5788926)
chr2 (86-188)||(3395405-3395507)
chr2 (15-48)||(31897095-31897128)
[»] chr5 (1 HSPs)
chr5 (86-188)||(38015885-38015987)
[»] chr8 (4 HSPs)
chr8 (86-176)||(23141760-23141850)
chr8 (86-188)||(10901395-10901497)
chr8 (86-176)||(42797250-42797340)
chr8 (86-176)||(13756568-13756658)
[»] chr6 (1 HSPs)
chr6 (86-176)||(1599714-1599804)
[»] chr3 (1 HSPs)
chr3 (86-176)||(50331923-50332013)
[»] chr4 (1 HSPs)
chr4 (86-188)||(13228724-13228825)
[»] chr1 (1 HSPs)
chr1 (86-188)||(43387052-43387154)
[»] scaffold0281 (2 HSPs)
scaffold0281 (15-48)||(3101-3134)
scaffold0281 (15-48)||(21208-21241)


Alignment Details
Target: scaffold0036 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 50273 - 50171
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaggatgtgat 185  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  50273 agttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgat 50174  T
Q  186 gtc 188  Q
    |||    
T  50173 gtc 50171  T

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Target: scaffold0380 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 14536 - 14647
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaggatgtgat 185  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||  ||||| ||||| ||||  ||||||| |||| ||||||||| | ||||||    
T  14536 agttaaaataacacattgaatgcaatagtagatgttgaacaacatataaatgagatgactcacatatttaatgtcttaagattttgggtgaagttgtgat 14635  T
Q  186 gtccatatcatt 197  Q
    ||| || |||||    
T  14636 gtcaatctcatt 14647  T

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Target: scaffold0159 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 33299 - 33199
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaggatgtgat 185  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||  ||||| ||||  ||||| ||||||| |||| ||||||||| | ||||||    
T  33299 agttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactc--atatctaatgtcttaagattttgggtgaagttgtgat 33202  T
Q  186 gtc 188  Q
    |||    
T  33201 gtc 33199  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 5788926 - 5788826
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaggatgtgat 185  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||  ||||| ||||  ||||| ||||||| |||| ||||||||| | ||||||    
T  5788926 agttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactc--atatctaatgtcttaagattttgggtgaagttgtgat 5788829  T
Q  186 gtc 188  Q
    |||    
T  5788828 gtc 5788826  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 3395507 - 3395405
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaggatgtgat 185  Q
    |||||||||||||| |||||||| ||||||||||| ||  |||||||||  ||||| ||||| ||||| ||||||| |||| ||||||||| | ||||||    
T  3395507 agttaaaataacactttgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatctaatgtcttaagattttgggtgaagttgtgat 3395408  T
Q  186 gtc 188  Q
    |||    
T  3395407 gtc 3395405  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 31897095 - 31897128
Alignment:
Q  15 tttggtgtttggatatggcagaaatgttcatttc 48  Q
    ||||||||||||||||||||||||||||||||||    
T  31897095 tttggtgtttggatatggcagaaatgttcatttc 31897128  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 38015987 - 38015885
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaggatgtgat 185  Q
    |||||||||||||| |||||||| ||||||||||| || ||||||||||  ||||| ||||| ||||| |||| || |||| ||||||||| | ||||||    
T  38015987 agttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactcatatatctaatgacttaagattttgggtgaagttgtgat 38015888  T
Q  186 gtc 188  Q
    |||    
T  38015887 gtc 38015885  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 23141850 - 23141760
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtga 176  Q
    |||||||||||||| |||||||| ||||||||||| ||  |||||||||  ||||| |||||  |||| ||||||| |||| |||||||||    
T  23141850 agttaaaataacacattgaatgcaatagtagatgttgagaaacatataaatgagatgactcatgtatctaatgtcttaagattttgggtga 23141760  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 10901497 - 10901395
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaggatgtgat 185  Q
    |||||||||||||| |||||||| ||||||||||| ||  |||||| ||  ||||| ||||  ||||| ||||| | |||| ||||||||| | ||||||    
T  10901497 agttaaaataacacattgaatgcaatagtagatgttgagtaacatacaagtgagatgactcgtatatctaatgtgttaagattttgggtgaagttgtgat 10901398  T
Q  186 gtc 188  Q
    |||    
T  10901397 gtc 10901395  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 42797340 - 42797250
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtga 176  Q
    |||||||||||||| |||||||| |||||| |||| ||  |||||||||  ||||| |||||  |||| ||||||| |||| |||||||||    
T  42797340 agttaaaataacacattgaatgcaatagtatatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagattttgggtga 42797250  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 13756568 - 13756658
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtga 176  Q
    |||||||||||||| |||||||| ||||||||||| ||  ||||| |||  || || |||||  |||| ||||||| |||| |||||||||    
T  13756568 agttaaaataacacattgaatgcaatagtagatgttgagaaacatttaagtgaaatgactcatgtatctaatgtcttaagattttgggtga 13756658  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 1599714 - 1599804
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtga 176  Q
    |||||||||||||| |||||||| ||||||||||| ||  |||||||||  ||||| |||||  |||| ||||||| |||| |||||||||    
T  1599714 agttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagattttgggtga 1599804  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 50332013 - 50331923
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtga 176  Q
    |||||||||||||| |||||||| ||||||||||| ||  |||||||||  ||||| |||||  |||| ||||||| |||| |||||||||    
T  50332013 agttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagattttgggtga 50331923  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 13228724 - 13228825
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaggatgtgat 185  Q
    |||||||||||||| |||||||| ||||||||||| ||  |||||||||  ||||| ||||| ||||| ||| ||| || | ||||||||| | ||||||    
T  13228724 agttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatctaat-tcttaaaattttgggtgaagttgtgat 13228822  T
Q  186 gtc 188  Q
    |||    
T  13228823 gtc 13228825  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 43387154 - 43387052
Alignment:
Q  86 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaggatgtgat 185  Q
    ||||||||| |||| |||||||| ||||||||||| ||  |||||||||  || || ||||  ||||| ||||||| |||| ||||||||| | ||||||    
T  43387154 agttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatgactcgtatatctaatgtcttaagattttgggtgaagttgtgat 43387055  T
Q  186 gtc 188  Q
    |||    
T  43387054 gtc 43387052  T

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Target: scaffold0281 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 3101 - 3134
Alignment:
Q  15 tttggtgtttggatatggcagaaatgttcatttc 48  Q
    ||||||||||||||||||||||||||||||||||    
T  3101 tttggtgtttggatatggcagaaatgttcatttc 3134  T

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Target: scaffold0281; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 21208 - 21241
Alignment:
Q  15 tttggtgtttggatatggcagaaatgttcatttc 48  Q
    |||||||||||||||||||| |||||||||||||    
T  21208 tttggtgtttggatatggcataaatgttcatttc 21241  T

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