View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_471 (Length: 204)
Name: NF9795A_low_471
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_471 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 43232775 - 43232630
Alignment:
| Q |
18 |
ggtgttagagttcatatattttaaatgtgcatagaagtaggttgtctgagaattaacccccgactcctatatatattgtgcaattgtattcttattaact |
117 |
Q |
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| T |
43232775 |
ggtgttagagttcacatattttaaatgtgcatagaagtgggttgtctgagatttaaaccccgactcctatatatattgtgcaa-tgtattcttattaact |
43232677 |
T |
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| Q |
118 |
agattaagtccacgatgacataaaaatagtattctaaataaaattaa |
164 |
Q |
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| T |
43232676 |
agattaagcccacgatgacataaaaatagtattttaaataaaattaa |
43232630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 43232614 - 43232577
Alignment:
| Q |
157 |
aaaattaatttgtttcatgatttataatttgtgatgtc |
194 |
Q |
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| T |
43232614 |
aaaattaatttgtttcatgatttataatttgtgatgtc |
43232577 |
T |
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