View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_465 (Length: 206)

Name: NF9795A_low_465
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_465
NF9795A_low_465
[»] scaffold0055 (17 HSPs)
scaffold0055 (9-194)||(12327-12512)
scaffold0055 (9-194)||(34401-34585)
scaffold0055 (9-194)||(53573-53757)
scaffold0055 (36-194)||(35525-35682)
scaffold0055 (40-186)||(43195-43340)
scaffold0055 (40-186)||(74581-74726)
scaffold0055 (40-186)||(55909-56054)
scaffold0055 (40-186)||(19679-19824)
scaffold0055 (118-194)||(11191-11267)
scaffold0055 (118-194)||(11363-11439)
scaffold0055 (118-194)||(30004-30080)
scaffold0055 (118-194)||(18699-18775)
scaffold0055 (118-194)||(30178-30254)
scaffold0055 (118-194)||(36570-36646)
scaffold0055 (118-194)||(44232-44308)
scaffold0055 (118-194)||(56957-57033)
scaffold0055 (118-194)||(75619-75695)
[»] scaffold0052 (16 HSPs)
scaffold0052 (9-194)||(72023-72208)
scaffold0052 (9-194)||(61479-61663)
scaffold0052 (40-186)||(3561-3706)
scaffold0052 (22-186)||(30306-30474)
scaffold0052 (40-186)||(41577-41722)
scaffold0052 (40-186)||(53515-53660)
scaffold0052 (40-186)||(18086-18231)
scaffold0052 (118-194)||(65985-66061)
scaffold0052 (118-194)||(73096-73172)
scaffold0052 (118-194)||(73268-73344)
scaffold0052 (118-194)||(2581-2657)
scaffold0052 (118-194)||(17117-17193)
scaffold0052 (118-194)||(40598-40674)
scaffold0052 (118-194)||(42522-42598)
scaffold0052 (118-194)||(54561-54637)
scaffold0052 (118-194)||(65811-65887)
[»] scaffold0021 (10 HSPs)
scaffold0021 (22-192)||(95798-95968)
scaffold0021 (22-195)||(39258-39430)
scaffold0021 (40-186)||(49187-49332)
scaffold0021 (9-168)||(34511-34669)
scaffold0021 (22-194)||(50265-50436)
scaffold0021 (118-195)||(41063-41140)
scaffold0021 (121-193)||(40899-40971)
scaffold0021 (118-194)||(51404-51480)
scaffold0021 (118-194)||(51576-51652)
scaffold0021 (120-194)||(40724-40798)
[»] scaffold0152 (6 HSPs)
scaffold0152 (33-194)||(19170-19330)
scaffold0152 (33-194)||(33382-33542)
scaffold0152 (33-194)||(37996-38156)
scaffold0152 (118-194)||(28259-28335)
scaffold0152 (118-194)||(37035-37111)
scaffold0152 (118-194)||(18207-18283)
[»] scaffold0515 (2 HSPs)
scaffold0515 (33-194)||(11600-11760)
scaffold0515 (118-194)||(10639-10715)
[»] chr6 (1 HSPs)
chr6 (33-194)||(9477454-9477614)
[»] chr5 (1 HSPs)
chr5 (35-193)||(21098509-21098666)
[»] scaffold1084 (1 HSPs)
scaffold1084 (118-194)||(2879-2955)


Alignment Details
Target: scaffold0055 (Bit Score: 158; Significance: 3e-84; HSPs: 17)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 12327 - 12512
Alignment:
Q  9 cgcgggctggtccagaccgtcccctgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttc 108  Q
    ||||| |||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12327 cgcggcctggactagaccttcccctgcccatgccaagccaaggcaaggtggcattttgcaattcgggagccaaacggggggtttgctttttcgtttcttc 12426  T
Q  109 ggctaatgacgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12427 ggcgaatgacgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 12512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 34585 - 34401
Alignment:
Q  9 cgcgggctggtccagaccgtcccctgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttc 108  Q
    ||||| |||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  34585 cgcggcctggactagaccttcccctgcccatgccaagccaaggcaaggtggcattttgcaattcgggagccaaacggggg-tttgctttttcgtttcttc 34487  T
Q  109 ggctaatgacgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    |||||||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||| |||||||    
T  34486 ggctaatgacgcttaaaatattcgcaattaacgaatcccacgtgaaaatttgctaaaatttctcgctggaggtccttacgatgtcc 34401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 53757 - 53573
Alignment:
Q  9 cgcgggctggtccagaccgtcccctgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttc 108  Q
    ||||| |||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  53757 cgcggcctggactagaccttcccctgcccatgccaagccaaggcaaggtggcattttgcaattcgggagccaaacggggg-tttgctttttcgtttcttc 53659  T
Q  109 ggctaatgacgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    |||||||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||| |||||||    
T  53658 ggctaatgacgcttaaaatattcgcaattaacgaatcccacgtgaaaatttgctaaaatttctcgctggaggtccttacgatgtcc 53573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 36 - 194
Target Start/End: Complemental strand, 35682 - 35525
Alignment:
Q  36 ccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcgcag 135  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  35682 ccatgccaagccaaggcaaggtggcattttgcaattcgggagccaaacggggg-tttgctttttcgtttcttcggctaatgacgcttaaaatattcgcaa 35584  T
Q  136 ttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||||||||| |||||||    
T  35583 ttaacgaatcccacgtgaaaatttgctaaaatttctcgctggaggtccttacgatgtcc 35525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 43340 - 43195
Alignment:
Q  40 gccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcgcagttaa 139  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43340 gccaagccaaggcaaggtggcattttgcaattcgggagccaaacggggg-tttgctttttcgtttcttcggctaatgacgcttaaaatattcgcaattaa 43242  T
Q  140 cgattcccgcgtgcaaatttgctaaaatttctcgctggaggtcctta 186  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||    
T  43241 cgaatcccgcgtgcaaatttgccaaaatttctcgctggaggtcctta 43195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 74726 - 74581
Alignment:
Q  40 gccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcgcagttaa 139  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  74726 gccaagccaaggcaaggtggcattttgcaattcgggagccaaacggggg-tttgctttttcgtttcttcggctaatgacgcttaaaatattcgcaattaa 74628  T
Q  140 cgattcccgcgtgcaaatttgctaaaatttctcgctggaggtcctta 186  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||    
T  74627 cgaatcccgcgtgcaaatttgccaaaatttctcgctggaggtcctta 74581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 56054 - 55909
Alignment:
Q  40 gccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcgcagttaa 139  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  56054 gccaagccaaggcaaggtggcattttgcaattcgggagccaaacgaggg-tttgctttttcgtttcttcggctaatgacgcttaaaatattcgcaattaa 55956  T
Q  140 cgattcccgcgtgcaaatttgctaaaatttctcgctggaggtcctta 186  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||    
T  55955 cgaatcccgcgtgcaaatttgccaaaatttctcgctggaggtcctta 55909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 19679 - 19824
Alignment:
Q  40 gccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcgcagttaa 139  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  19679 gccaagccaaggcaaggtggcattttgcaattcgggagccaaacgggg-gtttgctttttcgtttcttcggctaatgacgcttaaaatattggcaattaa 19777  T
Q  140 cgattcccgcgtgcaaatttgctaaaatttctcgctggaggtcctta 186  Q
    ||| |||||||||||||||| | ||||||||||||||||||||||||    
T  19778 cgaatcccgcgtgcaaattttccaaaatttctcgctggaggtcctta 19824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 11191 - 11267
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || |||||||||||||||||    
T  11191 cgcttaaaatattcgcagttaacgattcccgcatgcaaaattgccaaaatttctcggtgaaggtccttatgatgtcc 11267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 11363 - 11439
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  || |||||||||||||||||    
T  11363 cgcttaaaatattcgcagttaacgattcccgcgtgcaaaattgccaaaatttctcagtgaaggtccttatgatgtcc 11439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #11
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 30004 - 30080
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||||||||||| || |||||||||||||||||    
T  30004 cgcttaaaatattcgcagtttacgattcccgcgtgcaaaattgccaaaatttctcggtgaaggtccttatgatgtcc 30080  T

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Target: scaffold0055; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 18699 - 18775
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||  | ||||||||| |||||||    
T  18699 cgcttaagatattcgcagttaacgattcccgcgtgcaaaattgccaaaatttctcggagaaggtccttacgatgtcc 18775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 30178 - 30254
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||  |||||||||| || |||||||||||||||||    
T  30178 cgcttagaatattcgcagttgacgattcccgcgtgcaaaattgcccaaatttctcggtgaaggtccttatgatgtcc 30254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 36646 - 36570
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||  | ||||||||| |||||||    
T  36646 cgcttaagatattcgcagttaacgattcccgcgtgcaaaattgccaaaatttctcggagaaggtccttacgatgtcc 36570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 44308 - 44232
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||  | ||||||||| |||||||    
T  44308 cgcttaagatattcgcagttaacgattcccgcgtgcaaaattgccaaaatttctcggagaaggtccttacgatgtcc 44232  T

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Target: scaffold0055; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 57033 - 56957
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||  | ||||||||| |||||||    
T  57033 cgcttaagatattcgcagttaacgattcccgcgtgcaaaattgccaaaatttctcggagaaggtccttacgatgtcc 56957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 75695 - 75619
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||| |||||||||||||||||||||| |||||||| |||| |||||||||||  | |||||||||||||||||    
T  75695 cgcttaagatattcgcagttaacgattcccacgtgcaaaattgccaaaatttctcggagaaggtccttatgatgtcc 75619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 158; Significance: 3e-84; HSPs: 16)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 72208 - 72023
Alignment:
Q  9 cgcgggctggtccagaccgtcccctgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttc 108  Q
    ||||| |||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  72208 cgcggcctggactagaccttcccctgcccatgccaagccaaggcaaggtggcattttgcaattcgggagccaaacggggggtttgctttttcgtttcttc 72109  T
Q  109 ggctaatgacgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  72108 ggcgaatgacgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 72023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 61479 - 61663
Alignment:
Q  9 cgcgggctggtccagaccgtcccctgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttc 108  Q
    ||||| |||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  61479 cgcggcctggactagaccttcccctgcccatgccaagccaaggcaaggtggcattttgcaattcgggagccaaacgggg-gtttgctttttcgtttcttc 61577  T
Q  109 ggctaatgacgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    |||||||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||| |||||||    
T  61578 ggctaatgacgcttaaaatattcgcaattaacgaatcccacgtgaaaatttgctaaaatttctcgctggaggtccttacgatgtcc 61663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 3561 - 3706
Alignment:
Q  40 gccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcgcagttaa 139  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3561 gccaagccaaggcaaggtggcattttgcaattcgggagccaaacgggg-gtttgctttttcgtttcttcggctaatgacgcttaaaatattcgcaattaa 3659  T
Q  140 cgattcccgcgtgcaaatttgctaaaatttctcgctggaggtcctta 186  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||    
T  3660 cgaatcccgcgtgcaaatttgccaaaatttctcgctggaggtcctta 3706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 30474 - 30306
Alignment:
Q  22 agaccgtcccctgcccatgccaag-----ccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatg 116  Q
    ||||| ||||||||||||||||||     ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  30474 agaccttcccctgcccatgccaagtttagccaaggcaaggtggcattttgcaattcgggagccaaacggggg-tttgctttttcgtttcttcggctaatg 30376  T
Q  117 acgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtcctta 186  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  30375 acgcttaaaatattcgcaattaacgaatcccgcgtgcaaatttgccaaaatttctcgctggaggtcctta 30306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 41577 - 41722
Alignment:
Q  40 gccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcgcagttaa 139  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41577 gccaagccaaggcaaggtggcattttgcaattcgggagccaaacgaggg-tttgctttttcgtttcttcggctaatgacgcttaaaatattcgcaattaa 41675  T
Q  140 cgattcccgcgtgcaaatttgctaaaatttctcgctggaggtcctta 186  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||    
T  41676 cgaatcccgcgtgcaaatttgccaaaatttctcgctggaggtcctta 41722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 53660 - 53515
Alignment:
Q  40 gccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcgcagttaa 139  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53660 gccaagccaaggcaaggtggcattttgcaattcgggagccaaacgaggg-tttgctttttcgtttcttcggctaatgacgcttaaaatattcgcaattaa 53562  T
Q  140 cgattcccgcgtgcaaatttgctaaaatttctcgctggaggtcctta 186  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||    
T  53561 cgaatcccgcgtgcaaatttgccaaaatttctcgctggaggtcctta 53515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 18086 - 18231
Alignment:
Q  40 gccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcgcagttaa 139  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  18086 gccaagccaaggcaaggtggcattttgcaattcgggagccaaacgggg-gtttgctttttcgtttcttcggctaatgacgcttaaaatattggcaattaa 18184  T
Q  140 cgattcccgcgtgcaaatttgctaaaatttctcgctggaggtcctta 186  Q
    ||| |||||||||||||||| | ||||||||||||||||||||||||    
T  18185 cgaatcccgcgtgcaaattttccaaaatttctcgctggaggtcctta 18231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 66061 - 65985
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||||||||||| || |||||||||||||||||    
T  66061 cgcttaaaatattcgcagtttacgattcccgcgtgcaaaattgccaaaatttctcggtgaaggtccttatgatgtcc 65985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 73172 - 73096
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  || |||||||||||||||||    
T  73172 cgcttaaaatattcgcagttaacgattcccgcgtgcaaaattgccaaaatttctcagtgaaggtccttatgatgtcc 73096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 73344 - 73268
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || |||||||||||||||||    
T  73344 cgcttaaaatattcgcagttaacgattcccgcatgcaaaattgccaaaatttctcggtgaaggtccttatgatgtcc 73268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 2581 - 2657
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||  | ||||||||| |||||||    
T  2581 cgcttaagatattcgcagttaacgattcccgcgtgcaaaattgccaaaatttctcggagaaggtccttacgatgtcc 2657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 17117 - 17193
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||  | ||||||||| |||||||    
T  17117 cgcttaagatattcgcagttaacgattcccgcgtgcaaaattgccaaaatttctcggagaaggtccttacgatgtcc 17193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 40598 - 40674
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||  | ||||||||| |||||||    
T  40598 cgcttaagatattcgcagttaacgattcccgcgtgcaaaattgccaaaatttctcggagaaggtccttacgatgtcc 40674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 42598 - 42522
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||| |||||||||||||||||||||| |||||||| |||| |||||||||||  | |||||||||||||||||    
T  42598 cgcttaagatattcgcagttaacgattcccacgtgcaaaattgccaaaatttctcggagaaggtccttatgatgtcc 42522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 54637 - 54561
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||  | ||||||||| |||||||    
T  54637 cgcttaagatattcgcagttaacgattcccgcgtgcaaaattgccaaaatttctcggagaaggtccttacgatgtcc 54561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 65887 - 65811
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||  |||||||||| || |||||||||||||||||    
T  65887 cgcttagaatattcgcagttgacgattcccgcgtgcaaaattgcccaaatttctcggtgaaggtccttatgatgtcc 65811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 139; Significance: 6e-73; HSPs: 10)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 95968 - 95798
Alignment:
Q  22 agaccgtcccctgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgct 121  Q
    ||||| |||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  95968 agaccttcccctgcccgtgccaagccaaggcaaggtgacattttgcaattcgggagccaaacggggggtttgctttttcgtttcttcggctaatgacgct 95869  T
Q  122 taaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgt 192  Q
    |||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  95868 taaaatattcgcaagtaacgaatcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgt 95798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 39430 - 39258
Alignment:
Q  22 agaccgtcccctgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgct 121  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| | |||    
T  39430 agaccttcccctgcccatgccaagccaaggcaaggtggcattttgcaattcgggagccaaacagggg-tttgctttttcgtttcttcggctaataaagct 39332  T
Q  122 taaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcca 195  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||  |||||||||    
T  39331 taaaatattcgcagttaacgattcccgcgtgcaaaattgccaaaatttctcgctggaggtcctcttgatgtcca 39258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 49332 - 49187
Alignment:
Q  40 gccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcgcagttaa 139  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49332 gccaagccaaggcaaggtggcattttgcaattcgggagccaaacggggg-tttgctttttcgtttcttcggctaatgacgcttaaaatattcgcaattaa 49234  T
Q  140 cgattcccgcgtgcaaatttgctaaaatttctcgctggaggtcctta 186  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||    
T  49233 cgaatcccgcgtgcaaatttgccaaaatttctcgctggaggtcctta 49187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 34669 - 34511
Alignment:
Q  9 cgcgggctggtccagaccgtcccctgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttc 108  Q
    ||||| |||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  34669 cgcggcctggcctagaccttcccctgcccatgccaagccaaggcaaggtggcattttgcaattcgggagccaaa-ggggggtttgctttttcgtttcttc 34571  T
Q  109 ggctaatgacgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatt 168  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  34570 ggctaatgaagcttaaaatattcgcagttaacgattcccgcgtgcaaaattgccaaaatt 34511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 50436 - 50265
Alignment:
Q  22 agaccgtcccctgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgct 121  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  50436 agaccttcccctgcccatgccaagccaaggcaaggtggcatgttgcaattcgggagccaaacggggg-tttgctttttcgtttcttcagctaatgacgct 50338  T
Q  122 taaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||||||||||||||||||| ||||||||| | |||| ||||| |||| |||||| ||||| ||||||||    
T  50337 taaaatattcgcagttaacgatttccgcgtgcataattgccaaaatctctctctggagatccttttgatgtcc 50265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 41140 - 41063
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcca 195  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || ||||||||||||||||||    
T  41140 cgcttaaaatattcgcagttaacgattcccgcgtgcaaaattgccaaaatttctcggtgaaggtccttatgatgtcca 41063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 40971 - 40899
Alignment:
Q  121 ttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtc 193  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||| || ||||||||||||||||    
T  40971 ttaaaatattcgcagttaacgattcccgcgtgcaaacttgccaaaatttctcggtgaaggtccttatgatgtc 40899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 51480 - 51404
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  || |||||||||||||||||    
T  51480 cgcttaaaatattcgcagttaacgattcccgcgtgcaaaattgccaaaatttctcagtgaaggtccttatgatgtcc 51404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 51652 - 51576
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || |||||||||||||||||    
T  51652 cgcttaaaatattcgcagttaacgattcccgcatgcaaaattgccaaaatttctcggtgaaggtccttatgatgtcc 51576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 40798 - 40724
Alignment:
Q  120 cttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    |||||||||||||||||||||||||| | |||||||| | || ||||||||||| || |||||||||||||||||    
T  40798 cttaaaatattcgcagttaacgattctctcgtgcaaaatcgccaaaatttctcggtgaaggtccttatgatgtcc 40724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 19170 - 19330
Alignment:
Q  33 tgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcg 132  Q
    |||||||||||||||| ||||||| | ||||||||||||| |||||||||  |||| |||| |||||| |||||||||||| ||||||||||||||||||    
T  19170 tgcccatgccaagccacggcaaggcgacattttgcaattcgggagccaaattgggg-tttgttttttcatttcttcggctattgacgcttaaaatattcg 19268  T
Q  133 cagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    || | ||||| |||| |||||||||| || ||||||||||| ||||||||||||||||||||    
T  19269 caataaacgaatcccacgtgcaaattcgccaaaatttctcggtggaggtccttatgatgtcc 19330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 194
Target Start/End: Complemental strand, 33542 - 33382
Alignment:
Q  33 tgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcg 132  Q
    |||||||||||||||| ||||||| | ||||||||||||| |||||||||  |||| |||| |||||| |||||||||||| ||||||||||||||||||    
T  33542 tgcccatgccaagccacggcaaggcgacattttgcaattcgggagccaaattgggg-tttgttttttcatttcttcggctattgacgcttaaaatattcg 33444  T
Q  133 cagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    || | ||||| |||| |||||||||| || ||||||||||| ||||||||||||||||||||    
T  33443 caataaacgaatcccacgtgcaaattcgccaaaatttctcggtggaggtccttatgatgtcc 33382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 37996 - 38156
Alignment:
Q  33 tgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcg 132  Q
    |||||||||||||||| ||||||| | ||||||||||||| |||||||||  |||| |||| |||||| |||||||||||| ||||||||||||||||||    
T  37996 tgcccatgccaagccacggcaaggcgacattttgcaattcgggagccaaattgggg-tttgttttttcatttcttcggctattgacgcttaaaatattcg 38094  T
Q  133 cagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    || | ||||| |||| |||||||||| || ||||||||||| ||||||||||||||||||||    
T  38095 caataaacgaatcccacgtgcaaattcgccaaaatttctcggtggaggtccttatgatgtcc 38156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 28259 - 28335
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||||||||||||| ||||||| ||||||| |||||   || ||||||||||| ||||||||||||||||||||    
T  28259 cgcttaaaatattcgcacttaacgaatcccgcgagcaaaaacgccaaaatttctcggtggaggtccttatgatgtcc 28335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 37035 - 37111
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||||||||||||| ||||||| ||||||| |||||   || ||||||||||| ||||||||||||||||||||    
T  37035 cgcttaaaatattcgcacttaacgaatcccgcgagcaaaaacgccaaaatttctcggtggaggtccttatgatgtcc 37111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 18207 - 18283
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||||||||||||| ||||||| ||||| | |||||   || ||||||||||| ||||||||||||||||||||    
T  18207 cgcttaaaatattcgcacttaacgaatcccgtgagcaaaaacgccaaaatttctcggtggaggtccttatgatgtcc 18283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 11600 - 11760
Alignment:
Q  33 tgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcg 132  Q
    |||||||||||||||| ||||||| | ||||||| ||||| |||||||||  |||| |||| |||||| |||||||||||| ||||||||||||||||||    
T  11600 tgcccatgccaagccacggcaaggcgacattttggaattcgggagccaaattgggg-tttgttttttcatttcttcggctattgacgcttaaaatattcg 11698  T
Q  133 cagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    || | ||||| |||| |||||||||| || ||||||||||| ||||||||||||||||||||    
T  11699 caataaacgaatcccacgtgcaaattcgccaaaatttctcggtggaggtccttatgatgtcc 11760  T

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Target: scaffold0515; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 10639 - 10715
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    ||||||||||||||||| ||||||| ||||||| |||||   || ||||||||||| ||||||||||||||||||||    
T  10639 cgcttaaaatattcgcacttaacgaatcccgcgagcaaaaacgccaaaatttctcggtggaggtccttatgatgtcc 10715  T

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Target: chr6 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 33 - 194
Target Start/End: Complemental strand, 9477614 - 9477454
Alignment:
Q  33 tgcccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcg 132  Q
    |||||||||||||||| ||||||| | ||||||||||||| |||||||||  |||| |||| |||||| |||||||||||| ||||||||||||||||||    
T  9477614 tgcccatgccaagccacggcaaggcgacattttgcaattcgggagccaaattgggg-tttgttttttcatttcttcggctattgacgcttaaaatattcg 9477516  T
Q  133 cagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
     | |||||   |||| ||||||||  ||| ||| ||||||| ||||| ||||||||||||||    
T  9477515 taattaactcatccctcgtgcaaaaatgccaaagtttctcgatggagatccttatgatgtcc 9477454  T

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Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 21098666 - 21098509
Alignment:
Q  35 cccatgccaagccagggcaaggtggcattttgcaattccggagccaaacggggggtttgctttttcgtttcttcggctaatgacgcttaaaatattcgca 134  Q
    |||||||||||||| | | | | ||||||||||||||| |||| |||||  ||| |||| |||||| | | |||||||| |||||||||||||||||| |    
T  21098666 cccatgccaagccacgacgatgcggcattttgcaattcgggaggcaaactaggg-tttgttttttcatatattcggctattgacgcttaaaatattcgta 21098568  T
Q  135 gttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtc 193  Q
     |||| || || | | |||||| |||| ||||||||||| |||||||||||||||||||    
T  21098567 attaatgaatctctcatgcaaaattgccaaaatttctcggtggaggtccttatgatgtc 21098509  T

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Target: scaffold1084 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 2879 - 2955
Alignment:
Q  118 cgcttaaaatattcgcagttaacgattcccgcgtgcaaatttgctaaaatttctcgctggaggtccttatgatgtcc 194  Q
    |||||||||||||| ||||| |||||| |||| |||||| |||| ||||||||||| || |||||||||||||||||    
T  2879 cgcttaaaatattcacagttgacgatttccgcctgcaaaattgccaaaatttctcggtgaaggtccttatgatgtcc 2955  T

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