View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_454 (Length: 210)
Name: NF9795A_low_454
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_454 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 12416349 - 12416555
Alignment:
| Q |
1 |
taaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaaaattctttcagaaacttggtt |
100 |
Q |
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| T |
12416349 |
taaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaaaattctttcagaaacttggtt |
12416448 |
T |
|
| Q |
101 |
ttttgccataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttgaaaccataatcataagaacta |
200 |
Q |
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| T |
12416449 |
ttttgccatagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttgaaatcataagaataagaacta |
12416548 |
T |
|
| Q |
201 |
ttggatg |
207 |
Q |
| |
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||||||| |
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| T |
12416549 |
ttggatg |
12416555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 12428409 - 12428615
Alignment:
| Q |
1 |
taaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaaaattctttcagaaacttggtt |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12428409 |
taaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaaaattctttcagaaacttggtt |
12428508 |
T |
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| Q |
101 |
ttttgccataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttgaaaccataatcataagaacta |
200 |
Q |
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|||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
12428509 |
ttttgccatagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttgaaatcataagaataagaacta |
12428608 |
T |
|
| Q |
201 |
ttggatg |
207 |
Q |
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||||||| |
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| T |
12428609 |
ttggatg |
12428615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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