View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_444 (Length: 215)
Name: NF9795A_low_444
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_444 |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 43603222 - 43603349
Alignment:
| Q |
21 |
aagtgaagtgatgagaggttaaatgtttgatctccattctcacc----ataaaaactaacaatattaa-cattggttgatttaaagaaagtgaatatggg |
115 |
Q |
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| T |
43603222 |
aagtgaagtgatgagaggttaaatgtttgatctccattctcacccaccataaaaactaacaatattaaacattggttgatttaaagaaagtgaatatgtg |
43603321 |
T |
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| Q |
116 |
tagaacgaaggttaagtggtttttcatt |
143 |
Q |
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| T |
43603322 |
tagaacgaaggttaagtggtttttcatt |
43603349 |
T |
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Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 43603374 - 43603430
Alignment:
| Q |
142 |
ttgagtaatgtgcgaacc-tctgaaatatttgctcaagggttaattaccctccactt |
197 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43603374 |
ttgagtaatgtgcgaaccctctgaaatatttgctcaagggttaattaccctccactt |
43603430 |
T |
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