View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_411 (Length: 226)
Name: NF9795A_low_411
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_411 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 35527990 - 35528149
Alignment:
| Q |
1 |
tcacaccagtaatttcaaaagtgtttcccttatcatcggtcaataaaacggaacatgttgccttattttgacattgatgaccatcttcatcagcgagaca |
100 |
Q |
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| T |
35527990 |
tcacaccagtaatttcaaaagtgtttcccttatcatcggtcaataaaacggaacatgttgccttattttgacattgatgaccatcttcatcagcgagaca |
35528089 |
T |
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| Q |
101 |
ttgtagagataaagaagttatctcaaatactccctgcatgcgggacattgaaacaaacac |
160 |
Q |
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| T |
35528090 |
ttgtagagataaagaagttatctcaaatactccctgcatgccggacattgaaacaaacac |
35528149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 35545246 - 35545406
Alignment:
| Q |
1 |
tcacaccagtaatttcaaaagtgtttcccttatcatcggtcaataaaacggaacatgttgccttattttgacattgatgaccatcttcatcagcgagaca |
100 |
Q |
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| T |
35545246 |
tcacaccagtactttcaaaagtctttccattatcatcggtcaataaaacggaacatgctgctttgttgcggctaggacgaccatcttcatcagcgggcca |
35545345 |
T |
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| Q |
101 |
ttgtagagataaagaagttatctcaaatactccctgcatg--cgggacattgaaacaaaca |
159 |
Q |
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| T |
35545346 |
tgatagagataaagaagttatctcaaatactccctgcatgtataggacattgaaacaaaca |
35545406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 35564393 - 35564539
Alignment:
| Q |
13 |
tttcaaaagtgtttcccttatcatcggtcaataaaacggaacatgttgccttattttgacattgatgaccatcttcatcagcgagacattgtagagataa |
112 |
Q |
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| T |
35564393 |
tttcaaaagtctttccattatcatcggtcaataaaacggaacatgctgctttgttgtggctaggacgacaatcttcatcagcgggccatgatagagatat |
35564492 |
T |
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| Q |
113 |
agaagttatctcaaatactccctgcatgcgggacattgaaacaaaca |
159 |
Q |
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| T |
35564493 |
agaagttatctcaaatactccctgcatgtaggacattgaaacaaaca |
35564539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 34990223 - 34990112
Alignment:
| Q |
46 |
aaacggaacatgttgccttattttgacattgatgaccatcttcatcagcgagacattgtagagataaagaagttatctcaaatactccctgcatgcggga |
145 |
Q |
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|||| ||||||| ||||||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||| || |
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| T |
34990223 |
aaactgaacatgctgccttattgcgacatgaatgaccatctttgtcagcggaacattgtagagataaagaagttatctgaaatgttccctgcatgcaaga |
34990124 |
T |
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| Q |
146 |
cattgaaacaaa |
157 |
Q |
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|||||||||||| |
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| T |
34990123 |
cattgaaacaaa |
34990112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 35528173 - 35528215
Alignment:
| Q |
184 |
ctatacaagagaaaaataactttacatattattagattcaaag |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35528173 |
ctatacaagagaaaaataactttacatattattagattcaaag |
35528215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 34990103 - 34990061
Alignment:
| Q |
184 |
ctatacaagagaaaaataactttacatattattagattcaaag |
226 |
Q |
| |
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|||||||||||||||| |||||||||||| || |||||||||| |
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| T |
34990103 |
ctatacaagagaaaaagaactttacatatcataagattcaaag |
34990061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 34982039 - 34982076
Alignment:
| Q |
184 |
ctatacaagagaaaaataactttacatattattagatt |
221 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||||| |
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| T |
34982039 |
ctatacaagagaaaaagaactttacatattataagatt |
34982076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 34982350 - 34982306
Alignment:
| Q |
115 |
aagttatctcaaatactccctgcatgcgggacattgaaacaaaca |
159 |
Q |
| |
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||||||||| ||||| | ||||||||| ||||||||||||||||| |
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| T |
34982350 |
aagttatctgaaatattgcctgcatgcaggacattgaaacaaaca |
34982306 |
T |
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