View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_395 (Length: 229)

Name: NF9795A_low_395
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_395
NF9795A_low_395
[»] chr2 (2 HSPs)
chr2 (27-223)||(11330583-11330779)
chr2 (170-223)||(7178122-7178175)
[»] scaffold0288 (1 HSPs)
scaffold0288 (9-98)||(9860-9949)
[»] chr1 (1 HSPs)
chr1 (11-84)||(5362808-5362880)
[»] chr5 (6 HSPs)
chr5 (16-94)||(41658759-41658837)
chr5 (16-106)||(41685853-41685942)
chr5 (53-98)||(37097872-37097917)
chr5 (60-97)||(17896035-17896072)
chr5 (51-103)||(29694191-29694243)
chr5 (70-106)||(32497212-32497248)
[»] chr4 (2 HSPs)
chr4 (49-99)||(6861263-6861313)
chr4 (46-98)||(20619746-20619798)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 11330583 - 11330779
Alignment:
Q  27 ccggggatcgaactcggaccctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacctatgtgggactataacccaatttaactgaa 126  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11330583 ccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctcaccaaccgagctacctatgtgggactataacccaatttaactgaa 11330682  T
Q  127 gctattagcctaaagnnnnnnnattttcctctactgtactcatttaatatccgaattcttttgttgcaggtccgaaacattgctttgggaattgtat 223  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11330683 gctattagcctaaagtttttttattttcctctactgtactcatttaatatccgaattcttttgttgcaggtccggaacattgctttgggaattgtat 11330779  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 7178175 - 7178122
Alignment:
Q  170 ttaatatccgaattcttttgttgcaggtccgaaacattgctttgggaattgtat 223  Q
    |||||||||  ||| |||||||||||||||| |||||||| |||||||||||||    
T  7178175 ttaatatcctgattattttgttgcaggtccggaacattgcattgggaattgtat 7178122  T

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Target: scaffold0288 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 9949 - 9860
Alignment:
Q  9 agggggaaatgttagtttccggggatcgaactcggaccctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctaccta 98  Q
    ||||||||||||||||||| |||  || ||| |||  |||||||||||||||||||||||| ||||| |||||||| || ||||||||||    
T  9949 agggggaaatgttagtttctgggagtcaaacccgggacctccttcttaaatctccttcaacatccctgagctcaccaactgagctaccta 9860  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 5362880 - 5362808
Alignment:
Q  11 ggggaaatgttagtttccggggatcgaactcggaccctccttcttaaatctccttcaacgtcccttagctcacc 84  Q
    |||||||||||||||||| || || |||| |||  |||||||||||||||||||||||| ||||||||||||||    
T  5362880 ggggaaatgttagtttccagg-attgaacacgggacctccttcttaaatctccttcaacctcccttagctcacc 5362808  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 41658759 - 41658837
Alignment:
Q  16 aatgttagtttccggggatcgaactcggaccctccttcttaaatctccttcaacgtcccttagctcaccgaccgagcta 94  Q
    |||||||||||||||| ||| ||  |||   |||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  41658759 aatgttagtttccgggaatcaaatccgggaactccttcttaaacctccttcgacgtcccttagctcaccaaccgagcta 41658837  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 41685853 - 41685942
Alignment:
Q  16 aatgttagtttccggggatcgaactcggaccctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacctatgtgggac 106  Q
    |||||||||||||||| || |||| | |  ||||||||| ||||||||||  ||||||||||  |||||||| ||||||||||||||||||    
T  41685853 aatgttagtttccggg-atggaacccaggacctccttctcaaatctcctttgacgtcccttatatcaccgactgagctacctatgtgggac 41685942  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 37097917 - 37097872
Alignment:
Q  53 cttaaatctccttcaacgtcccttagctcaccgaccgagctaccta 98  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||    
T  37097917 cttaaatctccttcaatgtcccttagctcaccaaccgagctaccta 37097872  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 17896072 - 17896035
Alignment:
Q  60 ctccttcaacgtcccttagctcaccgaccgagctacct 97  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  17896072 ctccttcaatgtcccttagctcaccaaccgagctacct 17896035  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 29694243 - 29694191
Alignment:
Q  51 ttcttaaatctccttcaacgtcccttagctcaccgaccgagctacctatgtgg 103  Q
    ||||||||||||||||||| | |||| | | ||| ||||||||||||||||||    
T  29694243 ttcttaaatctccttcaacattcctttggttaccaaccgagctacctatgtgg 29694191  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 32497212 - 32497248
Alignment:
Q  70 gtcccttagctcaccgaccgagctacctatgtgggac 106  Q
    ||||||||||||||  |||||||||||||||||||||    
T  32497212 gtcccttagctcactaaccgagctacctatgtgggac 32497248  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 6861313 - 6861263
Alignment:
Q  49 ccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacctat 99  Q
    |||||||||||||| ||||| ||||||||||||||| ||||| ||||||||    
T  6861313 ccttcttaaatctctttcaatgtcccttagctcaccaaccgaactacctat 6861263  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 20619798 - 20619746
Alignment:
Q  46 cctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctaccta 98  Q
    |||||||||| || || || ||||||||||||||||||| |||||||| ||||    
T  20619798 cctccttcttcaaactgctacaacgtcccttagctcaccaaccgagctgccta 20619746  T

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