View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_390 (Length: 229)
Name: NF9795A_low_390
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_390 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 28082698 - 28082815
Alignment:
| Q |
1 |
tgagaggtcttctccatatgtatccctcttcctatctttccattcttccgacaaataactgtcaatttcagaagatggttcattatataactcactaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
28082698 |
tgagaggtcttctccatatgtatccttcttcctatctttccattcttcagacaaataactgtcaatttcagaagatggttgattatataactcactgaca |
28082797 |
T |
|
| Q |
101 |
aaatggagcaaagtaata |
118 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
28082798 |
aaatggagcaaagtaata |
28082815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 27929139 - 27929022
Alignment:
| Q |
1 |
tgagaggtcttctccatatgtatccctcttcctatctttccattcttccgacaaataactgtcaatttcagaagatggttcattatataactcactaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
27929139 |
tgagaggtcttctccatatgtatccttcttcctatctttccattcttcagacaaataactgtcaatttcagaagatggttggttatataactcactgaca |
27929040 |
T |
|
| Q |
101 |
aaatggagcaaagtaata |
118 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27929039 |
aaatggagcaaagtaata |
27929022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 107 - 229
Target Start/End: Complemental strand, 27929000 - 27928878
Alignment:
| Q |
107 |
agcaaagtaatagttgacataatggatacggataagttaaagaagagaaggaaatttaatgcatagaagtgtcatccagaagctcaaaaatacctttgca |
206 |
Q |
| |
|
|||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
27929000 |
agcaaagtaacagttgacaaaatggacactgataagttaaagaagagaaggaaatttaatgcaggcaagtgtcattcagaagctcaaaaatacctttgca |
27928901 |
T |
|
| Q |
207 |
cgaggtctttcagaccattatga |
229 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
27928900 |
caaggtctttcagaccattatga |
27928878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 28082837 - 28082959
Alignment:
| Q |
107 |
agcaaagtaatagttgacataatggatacggataagttaaagaagagaaggaaatttaatgcatagaagtgtcatccagaagctcaaaaatacctttgca |
206 |
Q |
| |
|
|||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
28082837 |
agcaaagtaacagttgacaaaatggacactgataagttaaagaagagaaggaaatttaatgcaggcaagtgtcattcagaagctcaaaaatacctttgca |
28082936 |
T |
|
| Q |
207 |
cgaggtctttcagaccattatga |
229 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
28082937 |
caaggtctttcagaccattatga |
28082959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 27935064 - 27934993
Alignment:
| Q |
1 |
tgagaggtcttctccatatgtatccctcttcctatctttccattcttccgacaaataactgtcaatttcaga |
72 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||| |||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
27935064 |
tgagaggtcttctccacatgtacccatcttcctctctttccattcttcacacaaataactgtaaatttcaga |
27934993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 229
Target Start/End: Complemental strand, 27934925 - 27934807
Alignment:
| Q |
107 |
agcaaagtaatagttgacataatggatacggataagttaaagaagagaaggaaatttaatgcatagaagtgtcatccagaagctcaaaaatacctttgca |
206 |
Q |
| |
|
||||||||||||||||||| |||||| || ||| || |||| |||| |||||||| |||| |||||||||| |||||||||||| |||||||||| |
|
|
| T |
27934925 |
agcaaagtaatagttgacacaatggacactgattagagaaagt---gaagcaaatttaaggcatggaagtgtcattgagaagctcaaaa-tacctttgca |
27934830 |
T |
|
| Q |
207 |
cgaggtctttcagaccattatga |
229 |
Q |
| |
|
| || |||||||||||| ||||| |
|
|
| T |
27934829 |
caagatctttcagaccactatga |
27934807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University