View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_386 (Length: 229)
Name: NF9795A_low_386
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_386 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 45141604 - 45141832
Alignment:
| Q |
1 |
aatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagccgcatactagaatttgatctgaatgaattcgacaacaccat |
100 |
Q |
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| T |
45141604 |
aatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctgaatgaatttgacaacaccat |
45141703 |
T |
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| Q |
101 |
ggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgccagtgta |
200 |
Q |
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| T |
45141704 |
ggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgccagtgta |
45141803 |
T |
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| Q |
201 |
gctgcatctgttgctggatatcgtggcca |
229 |
Q |
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| T |
45141804 |
gctgcctctgttgctggaaatcgtggcca |
45141832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 45152247 - 45152467
Alignment:
| Q |
1 |
aatatggaaccctagacattatgtttagcaacgctggaattgaaggtggta------tgtctagccgcatactagaatttgatctgaatgaattcgacaa |
94 |
Q |
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| T |
45152247 |
aatatggaaccttagacatcatgttcagcaatgctggaattggaggtgctactgctatgtctatcagcatactaa----tgatgtaaatgaatttgacaa |
45152342 |
T |
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| Q |
95 |
caccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgcc |
194 |
Q |
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| T |
45152343 |
caccatggccattaatgttcgtggatcagctacaactatcaagcacgctgcgcgtgttatggtggaaagaaaaattcgtggatccataatttgcacggct |
45152442 |
T |
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| Q |
195 |
agtgtagctgcatctgttgctggat |
219 |
Q |
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| T |
45152443 |
agtgtggctggctttgttgctggat |
45152467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 204
Target Start/End: Original strand, 38256128 - 38256271
Alignment:
| Q |
61 |
gcatactagaatttgatctgaatgaattcgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtgga |
160 |
Q |
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| T |
38256128 |
gcatactagaatttaacctaaatgaatttgacaacaccatggctgtgaacattcgtggtgcagctgcaactatcaagcatgcttcacgtgtaatggtgga |
38256227 |
T |
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| Q |
161 |
gagaaaaatccgtggatccataatttgtactgccagtgtagctg |
204 |
Q |
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| T |
38256228 |
aagaaaaatacgaggatcaataatttgcacagccagtgtagctg |
38256271 |
T |
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