View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_383 (Length: 229)
Name: NF9795A_low_383
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_383 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 3881400 - 3881207
Alignment:
| Q |
3 |
acattaatattaatgactcaattagtcgacaggcacgggttgttgcagacaagcaatcgtcattgagttgactataattcaaaacaacaaacatcagtcc |
102 |
Q |
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| T |
3881400 |
acattaatattaatgactcaattagtcgacaggcacgggttgttgcagacaagcagtcatcattgagttgactataattcaaaacaacaaacatcagtcc |
3881301 |
T |
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| Q |
103 |
atactccatacgcaagcaagataaccaagaaactagcaaataaagcattacctgcaaaaggaagcatccagagatgtcaagagaggacaattaa |
196 |
Q |
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| T |
3881300 |
atactccatacgcaagcaggatagccaagaaactagcaaataaagcatcacctgcaaaaggaagcatccagagatgtcaagagaggacaattaa |
3881207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 3867641 - 3867451
Alignment:
| Q |
3 |
acattaatattaatgactcaattagtcgacaggcacgggttgttgcagacaagcaatcgtcattgagttgactataattcaaaacaacaaacatcagtcc |
102 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||| ||||||| || |||||||||||||||| ||||| | |
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| T |
3867641 |
acattaatattaatgactcaatcagtggacaggcacgggttgttgcagacaagcagtcatcagtgagttggctgtaattcaaaacaacaa---tcagtac |
3867545 |
T |
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| Q |
103 |
atactccatacgcaagcaagataaccaagaaactagcaaataaagcattacctgcaaaaggaagcatccagagatgtcaagagaggacaattaa |
196 |
Q |
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| T |
3867544 |
atactccatacataagcaggataaccaagaaactagcagataaagcgtcacctgcaaaaggaagcatccagtgatgtcaagagaggacaattaa |
3867451 |
T |
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