View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_373 (Length: 230)

Name: NF9795A_low_373
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_373
NF9795A_low_373
[»] chr6 (21 HSPs)
chr6 (3-222)||(14026857-14027080)
chr6 (3-223)||(13873272-13873496)
chr6 (3-229)||(13890993-13891218)
chr6 (18-229)||(13470999-13471211)
chr6 (94-223)||(14086524-14086656)
chr6 (3-223)||(14112333-14112560)
chr6 (26-229)||(13942915-13943104)
chr6 (9-229)||(14016931-14017158)
chr6 (162-229)||(14049024-14049091)
chr6 (3-62)||(14027093-14027152)
chr6 (8-62)||(13873133-13873187)
chr6 (3-105)||(13470912-13471015)
chr6 (173-223)||(13861138-13861188)
chr6 (22-57)||(13890940-13890975)
chr6 (90-136)||(13861022-13861068)
chr6 (3-56)||(13873200-13873253)
chr6 (23-62)||(13860954-13860993)
chr6 (23-62)||(14086689-14086728)
chr6 (26-62)||(13470863-13470899)
chr6 (26-62)||(14017177-14017213)
chr6 (26-62)||(14112573-14112609)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 14027080 - 14026857
Alignment:
Q  3 ttgggaggaagcattccatctcaacttggaaatctctccaacttgcaatttcttggtctccatggatattatttaaaaggaaaaatac-atctcaacttg 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||| ||| |||||||||||    
T  14027080 ttggaaggaagcattccatctcaacttggaaatctctccaacttgcaatttcttgatctccatggaaatttttttaaaggaaaattaccatctcaacttg 14026981  T
Q  102 gaaagcttacaaacctacaagagctttatcttggagcaggatatggtg---gtggtctgactattgacaacagggatcacaacggaggtcagtggttgtc 198  Q
    |||||||||||||||||||||||||||||||||||   | ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14026980 gaaagcttacaaacctacaagagctttatcttggaaatgaatatggtgatagtggtctgactattgacaacagggatcacaacggaggtcagtggttgtc 14026881  T
Q  199 taatctaacttctttaacccatct 222  Q
    |||||| |||||||||||||||||    
T  14026880 taatcttacttctttaacccatct 14026857  T

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Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 13873272 - 13873496
Alignment:
Q  3 ttgggaggaagcattccatctcaacttggaaatctctccaacttgcaatttcttggtctccatggatattatttaaaaggaaaaata-catctcaacttg 101  Q
    |||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||||  |||| ||| |||||||||||||||| ||| ||||||||    
T  13873272 ttggaaggaaggattccatcccaacttggaaatctctccaacttgcaatttcttgatctctttggaaattctttaaaaggaaaaataccatatcaacttg 13873371  T
Q  102 gaaagcttacaaacctacaagagctttatcttggagcaggatatggtg---gtggtctgactattgacaacagggatcacaacggaggtcagtggttgtc 198  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||   ||  |||||  |||||||||  ||||||||  |||||| |||||||||     
T  13873372 gaaagcttacaaacctacaagatctttatcttggaggaggatatggtgatagtactctgataattgacaacgaggatcacagtggaggtaagtggttgtt 13873471  T
Q  199 taatctaacttctttaacccatctt 223  Q
     ||||||||||||||||||||||||    
T  13873472 gaatctaacttctttaacccatctt 13873496  T

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Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 13890993 - 13891218
Alignment:
Q  3 ttgggaggaagcattccatctcaacttggaaatctctccaacttgcaatttcttggtctccatggatattatttaaaaggaaaaata-catctcaacttg 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||| || ||||||||| | || |||||||    
T  13890993 ttggaaggaagcattccatctcaacttggaaatctctccaacttgcaatttcttgatctccttggaaattcttttaatggaaaaataccttcacaacttg 13891092  T
Q  102 gaaagcttacaaacctacaagagctttatcttggagcaggatatgg---tggtggtctgactattgacaacagggatcacaacggaggtcagtggttgtc 198  Q
    |||||||||| ||||||||||||||| || | ||   ||||||| |   | ||  ||| || ||||||||| | ||||||||||||||||  ||||| ||    
T  13891093 gaaagcttaccaacctacaagagcttcatttcgg---aggatatagtcttagttctctaacaattgacaacggagatcacaacggaggtc--tggttatc 13891187  T
Q  199 taatctaacttctttaacccatcttgacatg 229  Q
    |||||| |||||||||||||||||| |||||    
T  13891188 taatcttacttctttaacccatcttcacatg 13891218  T

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Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 13470999 - 13471211
Alignment:
Q  18 ccatctcaacttggaaatctctccaacttgcaatttcttggtctccatggatatta-tttaaaaggaaaaatac-atctcaacttggaaagcttacaaac 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |   ||| || |||  ||||||| || | |||||||||||||||||||||||||    
T  13470999 ccatctcaacttggaaatctctccaacttgcaatttcttgatctc-agctataataatttggaaggaaatattccatctcaacttggaaagcttacaaac 13471097  T
Q  116 ctacaagagctttatcttggagcaggatatggtggtggtctgactattgacaacagggatcacaacggaggtcagtggttgtctaatctaacttctttaa 215  Q
    |||||| ||||||||||||||| |    ||  ||||| ||||||||| ||||||   |||||||   ||||||||||| |||||||| | || |||||||    
T  13471098 ctacaaaagctttatcttggaggatatgattttggtgatctgactatggacaacgaagatcacagtagaggtcagtggctgtctaattttacctctttaa 13471197  T
Q  216 cccatcttgacatg 229  Q
    |||||||| |||||    
T  13471198 cccatcttcacatg 13471211  T

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Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 14086656 - 14086524
Alignment:
Q  94 tcaacttggaaagcttacaaacctacaagagctttatcttggagcaggatatggtg---gtggtctgactattgacaacagggatcacaacggaggtcag 190  Q
    |||||||||||||||||| ||||||||||||||||||||||||  |   ||||  |   ||| |||||| |||||||||| ||||||||  |||||||||    
T  14086656 tcaacttggaaagcttacgaacctacaagagctttatcttggaagaaagtatgaagatagtgctctgacaattgacaacaaggatcacagtggaggtcag 14086557  T
Q  191 tggttgtctaatctaacttctttaacccatctt 223  Q
    |||||||||||||||||||||||||||||||||    
T  14086556 tggttgtctaatctaacttctttaacccatctt 14086524  T

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Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 14112560 - 14112333
Alignment:
Q  3 ttgggaggaagcattccatctcaacttggaaatctctccaacttgcaatttcttggtctc--catggatattatttaaaaggaaaaatacatctcaactt 100  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||  ||  | ||| || | |  | | |||||||| ||    
T  14112560 ttggaaggaagcattccatctcaacttggaaatctttccaacttgcaatttcttgatctcagcatcaatggt-tttgaaggaagcattccatctcaaatt 14112462  T
Q  101 ggaaagcttacaaacctacaagagctttatcttggagcaggatatggtg---gtggtctgactattgacaacag---ggatcacaacggaggtcagtggt 194  Q
    |||||||||||||| |||||||||||||||||||||  | |  ||| ||   ||| |||||| |||| ||||||    |||||||  |||||||||||||    
T  14112461 ggaaagcttacaaatctacaagagctttatcttggaagaagggatgctgatagtgctctgacaattggcaacagtacagatcacagtggaggtcagtggt 14112362  T
Q  195 tgtctaatctaacttctttaacccatctt 223  Q
    ||||||||||||| |||||||||||||||    
T  14112361 tgtctaatctaacctctttaacccatctt 14112333  T

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Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 13943104 - 13942915
Alignment:
Q  26 acttggaaatctctccaacttgcaatttcttggtctccatggatattatttaaaaggaaaaatac-atctcaacttggaaagcttacaaacctacaagag 124  Q
    ||||||| |||||||||||||||||||||||| ||||       |||||||  ||||||  || | ||||||||||||||||||||||||||||||||||    
T  13943104 acttggagatctctccaacttgcaatttcttgatctcagcaacaattatttggaaggaagcattccatctcaacttggaaagcttacaaacctacaagag 13943005  T
Q  125 ctttatcttggagcaggatatggtggtggtctgactattgacaacagggatcacaacggaggtcagtggttgtctaatctaacttctttaacccatcttg 224  Q
    ||||||||| |               |||||||||||||||||||   |||||||| ||||||||||||||||||||||| ||||||||||||||||||     
T  13943004 ctttatcttag---------------tggtctgactattgacaacgaagatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttc 13942920  T

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Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 14017158 - 14016931
Alignment:
Q  9 ggaagcattccatctcaacttggaaatctctccaacttgcaatttcttggtctc--catggatatt-atttaaaaggaa-aaatacatctcaacttggaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |    | |||  |||  |||||| || | |||||||||||||||    
T  14017158 ggaagcattccatctcaacttggaaatctctccaacttgcaatttcttgatctcagccacaacattggtttggaaggaagaattccatctcaacttggaa 14017059  T
Q  105 agcttacaaacctacaagagctttatcttggagcaggatatggtggtgg---tctgactattgacaacagggatcacaacggaggtcagtggttgtctaa 201  Q
    |||||||||||||||||||||||||||||| || |||||| | |  | |   ||| ||  ||||||||   || | ||  ||||||||||||||||||||    
T  14017058 agcttacaaacctacaagagctttatcttgaaggaggatacgtttttagatttctaacagttgacaacgacgaacccagtggaggtcagtggttgtctaa 14016959  T
Q  202 tctaacttctttaacccatcttgacatg 229  Q
    ||| | |||||||||||||||| |||||    
T  14016958 tcttaattctttaacccatcttcacatg 14016931  T

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Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 14049091 - 14049024
Alignment:
Q  162 ttgacaacagggatcacaacggaggtcagtggttgtctaatctaacttctttaacccatcttgacatg 229  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||    
T  14049091 ttgacaacagggatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttcacatg 14049024  T

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Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 14027152 - 14027093
Alignment:
Q  3 ttgggaggaagcattccatctcaacttggaaatctctccaacttgcaatttcttggtctc 62  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  14027152 ttggaaggaagcattccatgtcaacttggaaatctctccaacttgcaatttcttgatctc 14027093  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 13873133 - 13873187
Alignment:
Q  8 aggaagcattccatctcaacttggaaatctctccaacttgcaatttcttggtctc 62  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  13873133 aggaagcattccatctaaactcggaaatctctccaacttgcaatttcttgatctc 13873187  T

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Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 13470912 - 13471015
Alignment:
Q  3 ttgggaggaagcattccatctcaacttggaaatctctccaacttgcaatttcttggtctccatggatattatttaaaaggaaaaata-catctcaacttg 101  Q
    |||| ||||||||||||| |||||||||||||||||| | || || ||| ||||| ||||||  || ||  ||| |||||||||||| ||||||||||||    
T  13470912 ttggaaggaagcattccaactcaacttggaaatctcttcgacatggaatatcttgatctccaccgaaatagttttaaaggaaaaataccatctcaacttg 13471011  T
Q  102 gaaa 105  Q
    ||||    
T  13471012 gaaa 13471015  T

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Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 13861138 - 13861188
Alignment:
Q  173 gatcacaacggaggtcagtggttgtctaatctaacttctttaacccatctt 223  Q
    |||||||  ||||||||||||||||||||||| ||||||||||||||||||    
T  13861138 gatcacagtggaggtcagtggttgtctaatcttacttctttaacccatctt 13861188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 13890940 - 13890975
Alignment:
Q  22 ctcaacttggaaatctctccaacttgcaatttcttg 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  13890940 ctcaacttggaaatctctccaacttgcaatttcttg 13890975  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 13861022 - 13861068
Alignment:
Q  90 catctcaacttggaaagcttacaaacctacaagagctttatcttgga 136  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||    
T  13861022 catctcaacttggaaagcttgtgaacctacaagagctttatcttgga 13861068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 13873200 - 13873253
Alignment:
Q  3 ttgggaggaagcattccatctcaacttggaaatctctccaacttgcaatttctt 56  Q
    |||| ||||||||| ||||| ||||||| |||||||||||||||| ||||||||    
T  13873200 ttggaaggaagcataccatcccaacttgaaaatctctccaacttgaaatttctt 13873253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 13860954 - 13860993
Alignment:
Q  23 tcaacttggaaatctctccaacttgcaatttcttggtctc 62  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  13860954 tcaacttggagatctctccaacttgcaatttcttgatctc 13860993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 14086728 - 14086689
Alignment:
Q  23 tcaacttggaaatctctccaacttgcaatttcttggtctc 62  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  14086728 tcaacttggagatctctccaacttgcaatttcttgatctc 14086689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 13470863 - 13470899
Alignment:
Q  26 acttggaaatctctccaacttgcaatttcttggtctc 62  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  13470863 acttggagatctctccaacttgcaatttcttgatctc 13470899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 14017213 - 14017177
Alignment:
Q  26 acttggaaatctctccaacttgcaatttcttggtctc 62  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  14017213 acttggagatctctccaacttgcaatttcttgatctc 14017177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 14112609 - 14112573
Alignment:
Q  26 acttggaaatctctccaacttgcaatttcttggtctc 62  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  14112609 acttggagatctctccaacttgcaatttcttgatctc 14112573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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