View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_371 (Length: 230)
Name: NF9795A_low_371
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_371 |
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| [»] scaffold0320 (1 HSPs) |
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Alignment Details
Target: scaffold0320 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 19787 - 20011
Alignment:
| Q |
1 |
aaattactagaacaaaggacattggtacatagaagcatgctacaccgattcatttcattcttagtcataataatactctaatttgttttcccgaataaaa |
100 |
Q |
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| T |
19787 |
aaattaccagaacaaagaagcatggtacataaaagcatgctacaccaattcatttcattcttagtcataataataccctaatttgttttcccgaataaaa |
19886 |
T |
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| Q |
101 |
atcattctttctttgttgttgttgatgtgtgaattaaggtttatcactctagttttgtggacgatgaaggagttaacagagtttgtggatgccctcttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19887 |
atcattctttctttgttgttgttgatgtgtgaattaaggtttatcactctagttttgtggacgatgaaggagttaacagagcttgtggatgccctcttct |
19986 |
T |
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| Q |
201 |
ccctttaaaaagccacattaagggt |
225 |
Q |
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|||||||||||||||||||||||| |
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| T |
19987 |
acctttaaaaagccacattaagggt |
20011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 50680650 - 50680874
Alignment:
| Q |
1 |
aaattactagaacaaaggacattggtacatagaagcatgctacaccgattcatttcattcttagtcataataatactctaatttgttttcccgaataaaa |
100 |
Q |
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| T |
50680650 |
aaattaccagaacaaagaagcatggtacatataagcatgctacaccaattcatttcattcttagtcataataataccctaatttgttttcccgaataaaa |
50680749 |
T |
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| Q |
101 |
atcattctttctttgttgttgttgatgtgtgaattaaggtttatcactctagttttgtggacgatgaaggagttaacagagtttgtggatgccctcttct |
200 |
Q |
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| T |
50680750 |
atcattctttctttgttgttgttgatgtgtgaattaaggtttatcactctagttttgtggacgatgaaggagttaactgagcttgtggatgccctcttct |
50680849 |
T |
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| Q |
201 |
ccctttaaaaagccacattaagggt |
225 |
Q |
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| T |
50680850 |
tcctttaaaaagccacattaagggt |
50680874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 47893962 - 47893856
Alignment:
| Q |
119 |
ttgttgatgtgtgaattaaggtttatcactctagttttgtggacgatgaaggagttaacagagtttgtggatgccctcttctccctttaaaaagccacat |
218 |
Q |
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||||| |||| |||||||||||||||||||||||||| || |||||||||||| ||||||||| |||||| ||||||||||| ||| ||||||| ||||| |
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| T |
47893962 |
ttgtttatgtatgaattaaggtttatcactctagtttcgtagacgatgaaggaattaacagagcttgtgggtgccctcttcttcctctaaaaagtcacat |
47893863 |
T |
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| Q |
219 |
taagggt |
225 |
Q |
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| T |
47893862 |
taagggt |
47893856 |
T |
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