View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_343 (Length: 232)
Name: NF9795A_low_343
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_343 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 41311027 - 41311239
Alignment:
| Q |
20 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
119 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311027 |
attgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
41311126 |
T |
|
| Q |
120 |
agtaatcactataaaaaccatctgggagagcagtctccgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
219 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311127 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
41311226 |
T |
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| Q |
220 |
aatcagtcaatga |
232 |
Q |
| |
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|| ||| |||||| |
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| T |
41311227 |
aaccagccaatga |
41311239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 43164710 - 43164917
Alignment:
| Q |
25 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
124 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| || || ||||| ||||||||||| | | ||| || |
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| T |
43164710 |
gtattcttgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaa |
43164809 |
T |
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| Q |
125 |
tcactataaaaaccatctgggagagcagtctccgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca |
224 |
Q |
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|||||||||||| ||||||| |||||| |||| |||| |||| |||||||||||||| |||||||||||||||| |||||||||| || || ||||| || |
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| T |
43164810 |
tcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaacca |
43164909 |
T |
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| Q |
225 |
gtcaatga |
232 |
Q |
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| |||||| |
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| T |
43164910 |
gccaatga |
43164917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 30165883 - 30165688
Alignment:
| Q |
25 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
124 |
Q |
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|||||||||||||||||||||||||| ||||| | |||||| |||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
30165883 |
gtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaattc----------- |
30165795 |
T |
|
| Q |
125 |
tcactataaaaaccatctgggagagcagtctccgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca |
224 |
Q |
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||| | || || ||| ||| ||||| |||| | || |||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| || |
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| T |
30165794 |
-cacgagaacaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaacca |
30165696 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 30124981 - 30125160
Alignment:
| Q |
20 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
119 |
Q |
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|||| |||||| |||||||||| |||||||| || | |||||| | | |||||| ||| ||||||| |||||||| | |||||||||| | || || |
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| T |
30124981 |
attgcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataatctacaggag |
30125080 |
T |
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| Q |
120 |
agtaatcactataaaaaccatctgggagagcagtctccgacagtgtcatttcctttaaatcaaaggcaataataacatcc |
199 |
Q |
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||||||| |||||||| ||| ||| ||||| | || |||| |||| |||||||||||||||||||| |||||||||| |
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| T |
30125081 |
agtaatcggtataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatcc |
30125160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 28180965 - 28181038
Alignment:
| Q |
123 |
aatcactataaaaaccatctgggagagcagtctccgacagtgtcatttcctttaaatcaaaggcaataataaca |
196 |
Q |
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|||| ||||||||| ||||||| ||||| | || |||| |||||||||||||||||||||||||||||||||| |
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| T |
28180965 |
aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataaca |
28181038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 30120078 - 30120112
Alignment:
| Q |
163 |
tgtcatttcctttaaatcaaaggcaataataacat |
197 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
30120078 |
tgtcgtttcctttaaatcaaaggcaataataacat |
30120112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 30131068 - 30131114
Alignment:
| Q |
153 |
tctccgacagtgtcatttcctttaaatcaaaggcaataataacatcc |
199 |
Q |
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|||| |||| ||||||||||||||||| |||||| |||||||||||| |
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| T |
30131068 |
tctctgacattgtcatttcctttaaattaaaggctataataacatcc |
30131114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 30130934 - 30130967
Alignment:
| Q |
22 |
tgtgtattcttgcatcacccatatcttaagtgta |
55 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
30130934 |
tgtgtattcttgcatcacccatatcttaactgta |
30130967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 21426703 - 21426642
Alignment:
| Q |
138 |
catctgggagagcagtctccgacagtgtcatttcctttaaatcaaaggcaataataacatcc |
199 |
Q |
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||||||| ||||| |||| |||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
21426703 |
catctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcc |
21426642 |
T |
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