View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_318 (Length: 239)

Name: NF9795A_low_318
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_318
NF9795A_low_318
[»] chr7 (11 HSPs)
chr7 (18-230)||(35938762-35938974)
chr7 (55-218)||(32727039-32727202)
chr7 (58-230)||(35981485-35981657)
chr7 (58-230)||(36002897-36003069)
chr7 (55-230)||(36222026-36222201)
chr7 (49-230)||(36218035-36218216)
chr7 (55-230)||(35957461-35957636)
chr7 (55-230)||(35976916-35977091)
chr7 (55-230)||(35998328-35998503)
chr7 (60-230)||(35946258-35946428)
chr7 (100-218)||(35951937-35952055)
[»] chr1 (2 HSPs)
chr1 (79-225)||(18117552-18117698)
chr1 (57-218)||(18125183-18125344)
[»] chr2 (1 HSPs)
chr2 (55-148)||(26329150-26329243)


Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 35938762 - 35938974
Alignment:
Q  18 aagtttagcaatactgcatctataagtgcggaaggtgtaatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatca 117  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35938762 aagtttagcaatactgcatctataatcgcggaaggtgtaatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggcatttgatca 35938861  T
Q  118 tagcttaattttagtgcaggtaaaatatcattttgcatctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttg 217  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35938862 tagcttaattttagtgcaggtaaaatatcattttgcttctgttctaaattccatatctcagaatctcttacaaattcccacttatttaaatcaaattttg 35938961  T
Q  218 aaaacagagaact 230  Q
    |||||||||||||    
T  35938962 aaaacagagaact 35938974  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 32727039 - 32727202
Alignment:
Q  55 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 154  Q
    |||||||||||||| ||||||||  |||||||||| |||||||| |||||||| ||||||||||||||||| || | ||||||||||||||||| || |     
T  32727039 taatctttgggataaagggaaaagaaagcaaaacattgcctcaaataggatggcatttgatcatagcttaacttcaatgcaggtaaaatatcatctttct 32727138  T
Q  155 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttga 218  Q
    ||||||||||||||||||||||||||||||| | ||||  |||||||||||||||| |||||||    
T  32727139 tctgttctaaattccatatctcagaatctctcacaaatatccacttatttaaatcatattttga 32727202  T

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Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 35981485 - 35981657
Alignment:
Q  58 tctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatct 157  Q
    ||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| || || |||||||||||||||| || | |||    
T  35981485 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 35981584  T
Q  158 gttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaact 230  Q
    | |||| |||||||| ||||||||| |||| |||| ||||||||||||||||||  ||||||||||| |||||    
T  35981585 gctctagattccataactcagaatcccttacaaatacccacttatttaaatcaagctttgaaaacagggaact 35981657  T

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Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 36002897 - 36003069
Alignment:
Q  58 tctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatct 157  Q
    ||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| || || |||||||||||||||| || | |||    
T  36002897 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 36002996  T
Q  158 gttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaact 230  Q
    | |||| |||||||| ||||||||| |||| |||| ||||||||||||||||||  ||||||||||| |||||    
T  36002997 gctctagattccataactcagaatcccttacaaatacccacttatttaaatcaagctttgaaaacagggaact 36003069  T

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Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 36222201 - 36222026
Alignment:
Q  55 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 154  Q
    |||||||||||||| | |||||||||||||||||| |||||||| |||||||| |||| ||||||||||||||||| ||||||||||||||||  || |     
T  36222201 taatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttct 36222102  T
Q  155 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaact 230  Q
    | |||||||| ||||| ||||||   |||||||  |||  |||||||||||||||||||||||| |||||||||||    
T  36222101 tttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaaatcaaattttgataacagagaact 36222026  T

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Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 49 - 230
Target Start/End: Complemental strand, 36218216 - 36218035
Alignment:
Q  49 aaggtgtaatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcat 148  Q
    ||||| || ||||||||||| | ||||||| |||||||||| || ||||  || ||||| ||||||||||||||||||||||  ||||||||||||||||    
T  36218216 aaggtatagtctttgggatacaaggaaaaacaagcaaaacattgtctcagatatgatggcatttgatcatagcttaattttaaagcaggtaaaatatcat 36218117  T
Q  149 tttgcatctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaact 230  Q
     || | |||||||||||||||||||||||   ||||||| ||||  |||||||| ||||||||||||||| |||||||||||    
T  36218116 ctttcttctgttctaaattccatatctcatggtctcttacaaataaccacttatctaaatcaaattttgagaacagagaact 36218035  T

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Target: chr7; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 35957461 - 35957636
Alignment:
Q  55 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 154  Q
    |||||||||||||| |||||||||||||||||||| || ||||  || ||||| ||||||||||| ||||||||||| |||||||||||||||||   |     
T  35957461 taatctttgggataaagggaaaaataagcaaaacattgtctcagatatgatggcatttgatcataacttaattttagcgcaggtaaaatatcattaatct 35957560  T
Q  155 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaact 230  Q
    | |||||||||||||| |||||||| || || | ||||||||||||| ||| |||||| ||||| || ||||||||    
T  35957561 tttgttctaaattccacatctcagagtccctaacaaattcccacttacttatatcaaagtttgagaagagagaact 35957636  T

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Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 35976916 - 35977091
Alignment:
Q  55 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 154  Q
    |||||||||||||| ||||||| |||| ||||||| || ||||  || ||||| ||||||||||||||||||||||| |||||||||||| ||| || |     
T  35976916 taatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttct 35977015  T
Q  155 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaact 230  Q
    | |||||||||||||| |||||||| || || |  |||||||||||  ||| |||||| ||||| || ||||||||    
T  35977016 tttgttctaaattccacatctcagagtccctaacgaattcccacttgcttatatcaaagtttgagaagagagaact 35977091  T

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Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 35998328 - 35998503
Alignment:
Q  55 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca 154  Q
    |||||||||||||| ||||||| |||| ||||||| || ||||  || ||||| ||||||||||||||||||||||| |||||||||||| ||| || |     
T  35998328 taatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttct 35998427  T
Q  155 tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaact 230  Q
    | |||||||||||||| |||||||| || || |  |||||||||||  ||| |||||| ||||| || ||||||||    
T  35998428 tttgttctaaattccacatctcagagtccctaacgaattcccacttgcttatatcaaagtttgagaagagagaact 35998503  T

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Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 230
Target Start/End: Original strand, 35946258 - 35946428
Alignment:
Q  60 tttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatctgt 159  Q
    ||||||| | || ||||||||||||||||| || || |  || ||||| ||||||||||| ||||||||||| |||||||| ||||||| || | | |||    
T  35946258 tttgggaaaaagagaaaaataagcaaaacattgtcttagatatgatggcatttgatcataacttaattttagcgcaggtaagatatcatctttcttttgt 35946357  T
Q  160 tctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaact 230  Q
    ||||||||||| |||||||| || || |  |||||||||||| ||| |||||| ||||| || ||||||||    
T  35946358 tctaaattccacatctcagagtccctaacgaattcccacttacttatatcaaagtttgagaagagagaact 35946428  T

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Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 218
Target Start/End: Original strand, 35951937 - 35952055
Alignment:
Q  100 taggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatctgttctaaattccatatctcagaatctcttataaattcccact 199  Q
    |||||||  |||||||||||||||||||| || |||||||||||||||| || |   |||||||||||||| ||  |||| ||||| | |||||||||||    
T  35951937 taggatgacatttgatcatagcttaatttcagggcaggtaaaatatcatctttctgttgttctaaattccaaatagcagagtctctgacaaattcccact 35952036  T
Q  200 tatttaaatcaaattttga 218  Q
    || ||||||| || |||||    
T  35952037 tacttaaatcgaagtttga 35952055  T

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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 18117552 - 18117698
Alignment:
Q  79 taagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatctgttctaaattccatatctcag 178  Q
    |||||||| |||||||| || |||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |||||||    
T  18117552 taagcaaagcagtgccttaaataggatggcattttatcatagcttaattttagtgcaggtaaaatatcattttgcttttgttctaaagtccacatctcag 18117651  T
Q  179 aatctcttataaattcccacttatttaaatcaaattttgaaaacaga 225  Q
    | ||||||  || |||||| |||||||||||||||||||||||||||    
T  18117652 agtctcttgcaagttcccatttatttaaatcaaattttgaaaacaga 18117698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 18125183 - 18125344
Alignment:
Q  57 atctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatc 156  Q
    |||||| ||||| ||||| ||||||||||| || ||||| || |||||||| ||||| |||||||| ||||||||||||||||||||||||| ||    |    
T  18125183 atctttaggataaagggagaaataagcaaagcattgccttaaataggatggcatttggtcatagctcaattttagtgcaggtaaaatatcatctttttgc 18125282  T
Q  157 tgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttga 218  Q
    |||| ||||||||| | |||||||||||||| ||||  |||  |||||||||||||||||||    
T  18125283 tgttttaaattccacagctcagaatctcttacaaatatccatgtatttaaatcaaattttga 18125344  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 26329243 - 26329150
Alignment:
Q  55 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcat 148  Q
    |||||||||||| | |||||||||||||||||||| || ||||| |||||||| ||||||||||||||||| || ||  |||||||||||||||    
T  26329243 taatctttgggaaaaagggaaaaataagcaaaacaatgtctcaaataggatggcatttgatcatagcttaacttaagcacaggtaaaatatcat 26329150  T

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