View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_311 (Length: 241)
Name: NF9795A_low_311
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_311 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 38059474 - 38059565
Alignment:
| Q |
8 |
gaaatgaacagagtataccttctt--atgtgttcaagggacacagagaaatccttggagcagataaggtcataatagaataatgcaatatgc |
97 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38059474 |
gaaatgaacagagtataccttctctcatgtgttcaagggacataaagaaatccttgtagcagataaggtcataatagaataatgcaatatgc |
38059565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 38060980 - 38060889
Alignment:
| Q |
8 |
gaaatgaacagagtataccttcttatgtgttcaagggacacag--agaaatccttggagcagataaggtcataatagaataatgcaatatgc |
97 |
Q |
| |
|
|||||||||| ||||||||||| || ||| |||||||||||| |||| |||||| |||| |||| |||||||||| ||||| ||||||| |
|
|
| T |
38060980 |
gaaatgaacaaagtataccttcacatttgtccaagggacacagatagaattccttgaagcatctaagttcataatagagtaatgtaatatgc |
38060889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University