View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_247 (Length: 248)
Name: NF9795A_low_247
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_247 |
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| [»] scaffold0143 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 33518469 - 33518692
Alignment:
| Q |
6 |
atcttatttagaggttgatccagacatcatgctctaaaagggagaaaaacacagcatttaataattaaacaagtttaacacaattaatacaagtagaact |
105 |
Q |
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| T |
33518469 |
atcttatttagaggttgatccagacatcatgctctaaaagggagaaaaacacagcatttaataattaaacaagtttaacacaattaatacaagtagaact |
33518568 |
T |
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| Q |
106 |
attcaattgctttgttcattactagagttagtcctccaaaatccttgatccaaacatagacctaaattttgtcttccaaaatccttgatccaaaaatata |
205 |
Q |
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| T |
33518569 |
attcaattgctttgttcattactagagttagtcctccaaaatccttgatccaaacatagacctaaattttgtcttccaaaatccttgatccaaaaatata |
33518668 |
T |
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| Q |
206 |
ctatatgttttggatgaagatgtg |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
33518669 |
ctatatgttttggatgaagatgtg |
33518692 |
T |
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Back To:
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Target: scaffold0143 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0143
Description:
Target: scaffold0143; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 2 - 103
Alignment:
| Q |
128 |
tagagttagtcctccaaaatccttgatccaaacatagacctaaattttgtcttccaaaatccttgatccaaaaatatactatatgttttggatgaagatg |
227 |
Q |
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| T |
2 |
tagagttagtcctccaaaatccttgatccaaacatagacctaaattttgtcttccaaaatccttgatccaaaaatatactatatgttttggatgaagatg |
101 |
T |
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| Q |
228 |
tg |
229 |
Q |
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|| |
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| T |
102 |
tg |
103 |
T |
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