View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_245 (Length: 248)
Name: NF9795A_low_245
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_245 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 37177037 - 37176851
Alignment:
| Q |
16 |
tggacatccttccaacagaggtcatggaaggcattctggatacagaggaagaggaggagaaaggatacgaggtaattctaattcttattgctttatttgc |
115 |
Q |
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| T |
37177037 |
tggacatccttccaacataggtcatggaaggcattatggatacaaaggaagaggaggagaaaggatacgaggtaattctaattcttattgctttatttgc |
37176938 |
T |
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| Q |
116 |
aaaaaatcaggacatgaatcaaaaaattgtcgctttagatgtactagatgcaaaattcccaaccattcaagtagagattgttggcat |
202 |
Q |
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| T |
37176937 |
aaaaaatctggacatgaatcaaaagattgtcgctttagatgtactagatgcaaaattcccaaccattcaagtagagattgttggcat |
37176851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 32853902 - 32853715
Alignment:
| Q |
16 |
tggacatccttccaacagaggtcatggaaggcattctggatacagaggaagaggaggagaaaggatacgaggtaattctaattcttattgcttta-tttg |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32853902 |
tggacatccttccaacagaggtcatggaaggcattatggatacaaaggaagaggaggagaaaggatacgaggtaattctaattcttattgctttattttg |
32853803 |
T |
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| Q |
115 |
caaaaaatcaggacatgaatcaaaaaattgtcgctttagatgtactagatgcaaaattcccaaccattcaagtagagattgttggcat |
202 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853802 |
caaaaaatctggacatgaatcaaaagattgtcgctttagatgtactagatgcaaaattcccaaccattcaagtagagattgttggcat |
32853715 |
T |
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