View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_230 (Length: 250)
Name: NF9795A_low_230
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_230 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 178121 - 177888
Alignment:
| Q |
4 |
cgtttatgaaattgcttccgggtggtcatgatgacttcttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaa |
103 |
Q |
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| T |
178121 |
cgtttatgaaattgcttccgggtggtcatgatgacttcttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaa |
178022 |
T |
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| Q |
104 |
tgttgaaagtaacctcttcattatcaactttgaccttcatgatgttatcatcgaggtcaatcatcattcgggctgtttgcatgaagttcctacccataag |
203 |
Q |
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| T |
178021 |
tgttgaaagtaacctcttctttatcaactttgaccttcatgatgttatcatcgaggtcaatcatcattcgggcaatttgcatgaagttcctacccataag |
177922 |
T |
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| Q |
204 |
tagaggcacatcttcatcctcctcgatgtccatc |
237 |
Q |
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| T |
177921 |
tagaggcacatcttcatcctcctcgatgtccatc |
177888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 20171740 - 20171509
Alignment:
| Q |
7 |
ttatgaaattgcttccgggtggtcatgatgacttcttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaatgt |
106 |
Q |
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| T |
20171740 |
ttatgaaattgcttccgagtggtcatgatgacttcttcggttgcatccattttaaagcatacactcttatcttttgagtgcttaatggcttcacgaatgt |
20171641 |
T |
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| Q |
107 |
tgaaagtaacctcttcattatcaact-ttgaccttcatgatgttatcatcgaggtcaatcatcattcgggctgtttgcatgaagttcctacccataagta |
205 |
Q |
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| T |
20171640 |
tgaaagttacctcttcattaacaactcttaactttcataatattatcatcgaggtcaatcatcatccgtgccgtttgcatgaagtatcttcccaaaagta |
20171541 |
T |
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| Q |
206 |
gaggcacatcttcatcctcctcgatgtccatc |
237 |
Q |
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| T |
20171540 |
taggtacatcatcatcctcctcgatatccatc |
20171509 |
T |
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