View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_225 (Length: 250)
Name: NF9795A_low_225
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_225 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 38322839 - 38322596
Alignment:
| Q |
1 |
ttcaatctctgaaggatggactttagattctgaaattgaggcatttatttgagcatcactttcgacaagtcgatatcctttgttttctttcagctgcaca |
100 |
Q |
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| T |
38322839 |
ttcaatctctgaaggatggactttagattctgaaattgaggcatttatttgagcattactttcgacaagtcgatatcctttgttttctttcagctgcaca |
38322740 |
T |
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| Q |
101 |
aatacattcaacattatttgctactattaattaataagatcataagttcataaatatgattacattgaccatttagtatagaaaaatgaacctgcacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38322739 |
aatacattcaacattatttgctactattaattaataagatcataagttcataaatatgattacattgaccatatagtatagaaaaatgaacctgcacttt |
38322640 |
T |
|
| Q |
201 |
ttgccaatcagggttgtactttatggctaacacatattcttgga |
244 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
38322639 |
ttgccaatcagggttgtactttatggctaacacattttgttgga |
38322596 |
T |
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