View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_214 (Length: 251)
Name: NF9795A_low_214
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_214 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 91 - 251
Target Start/End: Original strand, 12710405 - 12710565
Alignment:
| Q |
91 |
gcaagagttttgaatattcgtatacatctcaaccactaatttgtgtacaaatttacaatacacatgccaaattcactcacttatattggcataaatctaa |
190 |
Q |
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| T |
12710405 |
gcaagagttttgaatattcgtataaatctcaaccactaatttgtgtacaaatttacaatacacatgccaaattcactcacttatattggcataaatctaa |
12710504 |
T |
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| Q |
191 |
acaactaattaccacacatttacaatcttttacacacttaggtttaaccacgccaacttga |
251 |
Q |
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| T |
12710505 |
acaactaattaccacacatttacaatcttttacacacttaggtttaaccacgccaacttga |
12710565 |
T |
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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 12695849 - 12695946
Alignment:
| Q |
154 |
atgccaaattcactcacttatattggcataaatctaaacaactaattaccacacatttacaatcttttacacacttaggtttaaccacgccaacttga |
251 |
Q |
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| T |
12695849 |
atgccaaattcactcacttgtattggcataagtctcaacaactaattgctacacatttacaatctttcacacacttaagtttaaccacaccaacttga |
12695946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 12710119 - 12710187
Alignment:
| Q |
23 |
gagtagtcatggctcccaaaatggtttagaatttggattgcaaaagaatgaagcattgtagagttgatg |
91 |
Q |
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| T |
12710119 |
gagtagtcatggctcccaaaatggtttggaatttggattgcaaaagaatgaatcattgcagtgttgatg |
12710187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 12684410 - 12684471
Alignment:
| Q |
180 |
cataaatctaaacaactaattaccacacatttacaatcttttacacacttaggtttaaccac |
241 |
Q |
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| T |
12684410 |
cataaatctcaacaactaattgctacacatttacaatcttttacacacttaagttgaaccac |
12684471 |
T |
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