View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_190 (Length: 264)
Name: NF9795A_low_190
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_190 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 12679000 - 12679252
Alignment:
| Q |
1 |
ggaatattgtattaactcaaggtatgctttagagttaaattaattcaagtctatattttgattttgtttgttgttgatgagaacacgcttataacatttt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| |
|
|
| T |
12679000 |
ggaatattgtattaactaaaggtatgctttagagttaaattaattcaagtctatattttgattttgtttgttgttgaagggaacacgcttatagcatttt |
12679099 |
T |
|
| Q |
101 |
actagatatcaattcaataatatgtggagttacatcaataaaagtgtggggactagctaagaatgtggtcgctctcgttaaagtgtgagcaacctcattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
12679100 |
actagatatcaattcaataatatgtggagttacatcaataaaagtgtggggactagttaagaatgcggtcactctcgttaaagtgtgagcaacctcattt |
12679199 |
T |
|
| Q |
201 |
gtttagctcatacttgtgttgtctgtaatccaccattgcgccacacatgaaca |
253 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12679200 |
gtttggctcatacttgtgttgtctgtaatccaccattgcgccacacatgaaca |
12679252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University