View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_179 (Length: 270)
Name: NF9795A_low_179
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_179 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 6 - 262
Target Start/End: Complemental strand, 21016749 - 21016504
Alignment:
| Q |
6 |
ggtgttgcggaaggctaggaacaataaaattttcaataattggaatggtggagtggatgagatagtgaaagagatcaagatattgtcttggcggtggata |
105 |
Q |
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| T |
21016749 |
ggtgttgcggaaggctaggaacaataaaattttcaataattggaatggtggagtggatgagatagtggaagagatcaagataatgtcttggcggtggatg |
21016650 |
T |
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| Q |
106 |
ttggagcgtattaatagcccatcgtgtatgttctatgaagggtgttggaatccaacagaatgcttggtgagaaggaatctttgaggtggtgtctgctgcg |
205 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
21016649 |
ttggagcgtactaatagc--------------ctatgaagggtgttggaatccaacggaatgcttggtgagaaggaatttttgaggtggtgtctgttgcg |
21016564 |
T |
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| Q |
206 |
gtttc---nnnnnnnnnnnggtcttcgaataatttgacgcatcagacaacactcacccat |
262 |
Q |
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| T |
21016563 |
gtttcaaaaaaaaaaaaaaggtcttcaaataatttgacgcatcagacaacactcacccat |
21016504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 26397676 - 26397827
Alignment:
| Q |
6 |
ggtgttgcggaaggctaggaacaataaaattttcaataattggaatggtggagtggatgagatagtgaaagagatcaagatattgtcttggcggtggata |
105 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| ||||| |
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| T |
26397676 |
ggtgttgcgggaggctaggaacaataaaattttcaataattggaatggtggagtggatgagatagtggaagagatcaaggtaatgtcttggcgatggatg |
26397775 |
T |
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| Q |
106 |
ttggagcgtattaatagcccatcgtgtatgttctatgaagggtgttggaatc |
157 |
Q |
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| T |
26397776 |
ttggagcgtactaatagcccatcgtgtatgttctatgaatggtgttggaatc |
26397827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 26397871 - 26397911
Alignment:
| Q |
222 |
ggtcttcgaataatttgacgcatcagacaacactcacccat |
262 |
Q |
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| T |
26397871 |
ggtcttcaaataatttgacgcatcagacaacactcacccat |
26397911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Original strand, 26397822 - 26397852
Alignment:
| Q |
179 |
ggaatctttgaggtggtgtctgctgcggttt |
209 |
Q |
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| T |
26397822 |
ggaatctttgaggtggtgtctgctgcggttt |
26397852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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