View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_171 (Length: 273)

Name: NF9795A_low_171
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_171
NF9795A_low_171
[»] chr8 (2 HSPs)
chr8 (10-273)||(39625449-39625723)
chr8 (10-273)||(39634999-39635273)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 39625723 - 39625449
Alignment:
Q  10 aaaaatatagggaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaa-ctatttaaggaaatttaaactaagatcgaaagacctagt 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39625723 aaaaatataggaaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaaactatttaaggaaatttaaactaagatcgaaagacctagt 39625624  T
Q  109 tattcatcaaaattagtattagcttacaaattaaacagagaaatattgcatcggaattgattaagattgatgtgcgatgggaaggttgagtaaagaagag 208  Q
    ||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39625623 tattcatcaaaattagtattagcttacaaa-----cagagaaatattgcatcggaattgattaagattgatgtgcgatgggaatgttgagtaaagaagag 39625529  T
Q  209 aaggaaaaag---------------cagcgacaatggtggcgacagtgagaggaagtaaacgaaagggtattgcaaagag 273  Q
    ||||||||||               |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39625528 aaggaaaaagcagcagtagggatggcagcgacaatggtggcgacagtgagaggaagtaaacaaaagggtattgcaaagag 39625449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 39635273 - 39634999
Alignment:
Q  10 aaaaatatagggaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaa-ctatttaaggaaatttaaactaagatcgaaagacctagt 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39635273 aaaaatataggaaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaaactatttaaggaaatttaaactaagatcgaaagacctagt 39635174  T
Q  109 tattcatcaaaattagtattagcttacaaattaaacagagaaatattgcatcggaattgattaagattgatgtgcgatgggaaggttgagtaaagaagag 208  Q
    ||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39635173 tattcatcaaaattagtattagcttacaaa-----cagagaaatattgcatcggaattgattaagattgatgtgcgatgggaatgttgagtaaagaagag 39635079  T
Q  209 aaggaaaaag---------------cagcgacaatggtggcgacagtgagaggaagtaaacgaaagggtattgcaaagag 273  Q
    ||||||||||               |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39635078 aaggaaaaagcagcagtagggatggcagcgacaatggtggcgacagtgagaggaagtaaacaaaagggtattgcaaagag 39634999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University