View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_169 (Length: 275)
Name: NF9795A_low_169
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_169 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 76 - 268
Target Start/End: Original strand, 13879697 - 13879887
Alignment:
| Q |
76 |
cagctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaat |
175 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879697 |
cagctcattggtgttgaaatagcgaatgagtcgtggagtggcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaat |
13879796 |
T |
|
| Q |
176 |
gcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggtaaatgccattgtgttgacagttgacagagtgagattttcttgg |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
13879797 |
gcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttaacagttgac--agtgagattttcttgg |
13879887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 13875477 - 13875640
Alignment:
| Q |
79 |
ctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgca |
178 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| || | |||||||||||| || || ||||||||||||||||||| |||| || ||||||||| || | |
|
|
| T |
13875477 |
ctcattggtgttgaaatagcgaatgagtggaggtgcggtgtaggagatggctacgagtgacatggcggcagtagcgacggggtggcggcgaatgagtgaa |
13875576 |
T |
|
| Q |
179 |
ggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggtaaatgccattgtgttga |
242 |
Q |
| |
|
|||||||||| |||||| ||| |||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
13875577 |
ggcacggcggccatgaatgagcggtagcaggaagagaggaggcgggaaaatgccattgtgttga |
13875640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 13879630 - 13879675
Alignment:
| Q |
6 |
actcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879630 |
actcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
13879675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University