View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_139 (Length: 291)

Name: NF9795A_low_139
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_139
NF9795A_low_139
[»] chr5 (2 HSPs)
chr5 (13-291)||(28532162-28532438)
chr5 (245-290)||(29021373-29021418)
[»] chr6 (4 HSPs)
chr6 (16-290)||(6588705-6588974)
chr6 (14-72)||(6416418-6416476)
chr6 (17-68)||(8913659-8913710)
chr6 (14-72)||(6594189-6594247)
[»] chr4 (6 HSPs)
chr4 (14-291)||(21833759-21834028)
chr4 (172-281)||(53761248-53761357)
chr4 (251-286)||(1601088-1601123)
chr4 (116-211)||(3438105-3438200)
chr4 (141-222)||(547490-547571)
chr4 (114-211)||(55908183-55908280)
[»] chr3 (2 HSPs)
chr3 (116-291)||(51763821-51763996)
chr3 (14-72)||(13470321-13470379)
[»] chr1 (1 HSPs)
chr1 (121-291)||(19467880-19468050)
[»] chr7 (4 HSPs)
chr7 (14-72)||(10615045-10615103)
chr7 (115-291)||(10169511-10169687)
chr7 (115-291)||(10177036-10177212)
chr7 (184-291)||(10615207-10615314)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 28532162 - 28532438
Alignment:
Q  13 gatggacatcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaatttactaagtccaatataatatacaaatgtcggaaacctt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     |||||||||||||||||    
T  28532162 gatggacatcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaacttactaagtccaatata-----caaatgtcggaaacctt 28532256  T
Q  113 gacg---acaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaat 209  Q
    ||||   ||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  28532257 gacgtcgacacttggataacaaacaaaagagtccgtcataactatagccccagcgattttttaggacaagctttatcaaaggaagacctccccttgcaat 28532356  T
Q  210 agtgtagagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaata 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532357 agtgtagagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaata 28532438  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 29021373 - 29021418
Alignment:
Q  245 acaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaat 290  Q
    ||||| |||||||||| ||||||||||||||||||||  |||||||    
T  29021373 acaaatcaagacaagttaaacccttgaaactcaccaacaagtcaat 29021418  T

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Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 6588974 - 6588705
Alignment:
Q  16 ggacatcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaatttactaagtccaatataatatacaaatgtcggaaaccttgac 115  Q
    ||||| ||||||||||||||| |||||||| | || |||||||||||||||||||||  || ||  | ||| ||      ||||||| |||||| || |     
T  6588974 ggacaccaaatcaccaagaaaggaagacaattcgacaacatgttgatcattcagaaacctattatcttcaagatc-----caaatgttggaaacttttat 6588880  T
Q  116 gacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgta 215  Q
    ||||  ||||||||||| |||||||||||| ||||  |  |||  | |||| ||| || |||||  ||||||||||||||| |  |||||||||||||||    
T  6588879 gacacatggataacaaataaaagagtccattataataacggccagaacaatatttgagtacaagtcttgtcaaaggaagacgtttccttgcaatagtgta 6588780  T
Q  216 gagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaat 290  Q
    |||||||||||| || ||||| |||  | ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  6588779 gagcaactcatcggagatattcaaagcagacaaaccaagacaagtcaaactcttcaaactcaccaatgagtcaat 6588705  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 6416418 - 6416476
Alignment:
Q  14 atggacatcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaa 72  Q
    |||||||||||| ||| |||||||| |||||| |||| ||||||||||||||| |||||    
T  6416418 atggacatcaaaccactaagaaacggagacaattggacaacatgttgatcattaagaaa 6416476  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 8913710 - 8913659
Alignment:
Q  17 gacatcaaatcaccaagaaacgaagacaactggataacatgttgatcattca 68  Q
    |||| ||||| |||||||||| ||||||||| || |||||||||||||||||    
T  8913710 gacaccaaattaccaagaaacaaagacaacttgacaacatgttgatcattca 8913659  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 6594247 - 6594189
Alignment:
Q  14 atggacatcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaa 72  Q
    |||||| ||||| || |||||||| ||||||||| |  |||||||||||||||||||||    
T  6594247 atggacttcaaaccagcaagaaacaaagacaactcggcaacatgttgatcattcagaaa 6594189  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 21834028 - 21833759
Alignment:
Q  14 atggacatcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaatttactaagtccaatataatatacaaatgtcggaaaccttg 113  Q
    ||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||||||  |  ||  | ||| ||      ||||||| ||| ||| ||    
T  21834028 atggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaagatc-----caaatgttggacaccatg 21833934  T
Q  114 acgacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtg 213  Q
    ||     ||||||||||||||||||| ||||||||||||||||||   ||| |||   ||||||||| | || |||||||||||| |||||||||||| |    
T  21833933 acct---ttggataacaaacaaaagattccatcataactatagccggtgcattttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagag 21833837  T
Q  214 tagagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaata 291  Q
    ||||| ||||||||  | ||||  ||| ||  ||||| |||||||||||||||||| |||||||| |||||| |||||    
T  21833836 tagagtaactcatccaagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcactaatgagccaata 21833759  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 53761357 - 53761248
Alignment:
Q  172 aggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttga 271  Q
    ||||||||  ||||||||||||||| | || ||||||||| ||||||||||| ||| |||||    ||||  | ||||  |||| ||||||||||||| |    
T  53761357 aggacaagacttgtcaaaggaagacattcctttgcaatagagtagagcaacttatctgaaattcctaaatgctgcaaattaagagaagtcaaacccttca 53761258  T
Q  272 aactcaccaa 281  Q
    ||||||||||    
T  53761257 aactcaccaa 53761248  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 1601088 - 1601123
Alignment:
Q  251 caagacaagtcaaacccttgaaactcaccaatgagt 286  Q
    ||||||||||||||||||| ||||||||||||||||    
T  1601088 caagacaagtcaaacccttcaaactcaccaatgagt 1601123  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 3438200 - 3438105
Alignment:
Q  116 gacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatag 211  Q
    |||| |||||||||| | |||||| | || |||||||||||||   |||||| |  ||||||||| || ||||||||||||||||  |||||||||    
T  3438200 gacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaaggaagacctccaattgcaatag 3438105  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 547490 - 547571
Alignment:
Q  141 tccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagcaac 222  Q
    |||| |||||||||||||  | |||||||  |||||||||||| ||||||||| | || || ||||||||| | ||||||||    
T  547490 tccagcataactatagccgaaacaattttggaggacaagctttctcaaaggaatagcttccattgcaatagaggagagcaac 547571  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 55908280 - 55908183
Alignment:
Q  114 acgacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatag 211  Q
    |||||| |||||||||||| |  | | |||| ||||| |||||||   ||||||||  ||||||||  || ||||||||||||||||| |||||||||    
T  55908280 acgacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatag 55908183  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 116 - 291
Target Start/End: Complemental strand, 51763996 - 51763821
Alignment:
Q  116 gacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgta 215  Q
    |||| ||||||| |||||||| || |||| ||||||||||||||  |||| |||  ||||||||| || ||||| |||||||| |||||||||| | |||    
T  51763996 gacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaaggacaagccttttcaaaagaagaccttcccttgcaatcgagta 51763897  T
Q  216 gagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaata 291  Q
    ||||||||||||||| || || |||   | |||| ||||| ||||||||||||| ||||||||||| || ||||||    
T  51763896 gagcaactcatcagagattttcaaacgcttcaaatcaagagaagtcaaacccttcaaactcaccaacgaatcaata 51763821  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 13470379 - 13470321
Alignment:
Q  14 atggacatcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaa 72  Q
    |||||||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||    
T  13470379 atggacatcaaaccactaagaaacgaagacaattggagaacatgttgatcattcagaaa 13470321  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 291
Target Start/End: Complemental strand, 19468050 - 19467880
Alignment:
Q  121 ttggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagca 220  Q
    ||||||||||||||||||| |||| |||| |||| |||  |||||| ||| ||||||||| | |||||||| || ||| ||| |||||||| ||||||||    
T  19468050 ttggataacaaacaaaagattccagcatagctatggccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtagagca 19467951  T
Q  221 actcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaata 291  Q
      |||||||| ||||| | | |  || ||  |||| ||||||||||||| ||||||| |||||||||||||    
T  19467950 tttcatcagagatattcagaaaccaccaagtaagagaagtcaaacccttcaaactcagcaatgagtcaata 19467880  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 10615045 - 10615103
Alignment:
Q  14 atggacatcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaa 72  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||    
T  10615045 atggacatcaaatcaccaagaaatgaagacaattggacaacatgttgatcattcagaaa 10615103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 291
Target Start/End: Complemental strand, 10169687 - 10169511
Alignment:
Q  115 cgacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgt 214  Q
    ||||| || ||| |||||||||||| |||| |||| || ||| || |||||| | | ||| ||||| | |||||||| |||||| |||| ||||||| ||    
T  10169687 cgacacttagatgacaaacaaaagattccagcatagctttagtccaagcaatatctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagt 10169588  T
Q  215 agagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaata 291  Q
    ||||||  |||||||| ||||  | | |   ||||  |||| ||||||||||||| ||||||||||  |||||||||    
T  10169587 agagcatttcatcagagatatccagagatctcaaagaaagagaagtcaaacccttcaaactcaccagcgagtcaata 10169511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 291
Target Start/End: Complemental strand, 10177212 - 10177036
Alignment:
Q  115 cgacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgt 214  Q
    ||||| || ||| |||||||||||| |||| |||| || ||| || |||||| | | ||| ||||| | |||||||| |||||| |||| ||||||| ||    
T  10177212 cgacacttagatgacaaacaaaagattccagcatagctttagtccaagcaatatctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagt 10177113  T
Q  215 agagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaata 291  Q
    ||||||  |||||||| ||||  | | |   ||||  |||| ||||||||||||| ||||||||||  |||||||||    
T  10177112 agagcatttcatcagagatatccagagatctcaaagaaagagaagtcaaacccttcaaactcaccagcgagtcaata 10177036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 291
Target Start/End: Original strand, 10615207 - 10615314
Alignment:
Q  184 gtcaaaggaagacctccccttgcaatagtgtagagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatg 283  Q
    ||||||||||||||  |||||||||||| ||| | ||| | ||  || ||||| | | | | |||| ||||||||||||| ||||| |||||||||||||    
T  10615207 gtcaaaggaagacccacccttgcaatagagtaaaacaagttatttgagatattcataaactgcaaatcaagacaagtcaagcccttcaaactcaccaatg 10615306  T
Q  284 agtcaata 291  Q
    ||||||||    
T  10615307 agtcaata 10615314  T

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