View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_132 (Length: 294)
Name: NF9795A_low_132
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_132 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 26153079 - 26152799
Alignment:
| Q |
15 |
atggacatcaatgaacaacg-aacacacatttgatataaaaaatcaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaact |
113 |
Q |
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| T |
26153079 |
atggacaacaatgaacaacacaaaacacgtttgatataaaaaatgaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaact |
26152980 |
T |
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| Q |
114 |
ctatctttatacccatatattctcttccaagttgaataatgaattcagtaaattttgccaaaatttggcactcttcatgtgttttgacctctgaaacaaa |
213 |
Q |
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| T |
26152979 |
ctatctttatatccatatattctcttccaagttgaataatgaattcagtaaattttgccaaaatttggcactcttcatgtgttttgacctctgaaacaaa |
26152880 |
T |
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| Q |
214 |
accatgaatgaccaattttttcaggttgggacatctttccaaaagtccatctacccattccacaaaaagatcattgattga |
294 |
Q |
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| T |
26152879 |
accatgaatgaccaattttttcaggttgggacatctttccaaaagcccatctacccattccacaaaaagatcattgattga |
26152799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 26158076 - 26157919
Alignment:
| Q |
15 |
atggacatcaatgaacaacgaacacacatttgatataaaaaatcaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaactc |
114 |
Q |
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| T |
26158076 |
atggacaacaatgaacaacgtaaacacgtttgatctaaaaaatgaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaactc |
26157977 |
T |
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| Q |
115 |
tatctttatacccatatattctcttccaagttgaataatgaattcagtaaattttgcc |
172 |
Q |
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| T |
26157976 |
tatctttatatccatatattctcttccaagttgaataataaattcagtaaattttgcc |
26157919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 26171374 - 26171217
Alignment:
| Q |
15 |
atggacatcaatgaacaacgaacacacatttgatataaaaaatcaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaactc |
114 |
Q |
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||||||| |||||||||||| | |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26171374 |
atggacaacaatgaacaacgtaaacacgtttgatctaaaaaatgaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaactc |
26171275 |
T |
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| Q |
115 |
tatctttatacccatatattctcttccaagttgaataatgaattcagtaaattttgcc |
172 |
Q |
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| T |
26171274 |
tatctttatatccatatattctcttccaagttgaataataaattcagtaaattttgcc |
26171217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 26166377 - 26166219
Alignment:
| Q |
15 |
atggacatcaatgaacaacg-aacacacatttgatataaaaaatcaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaact |
113 |
Q |
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||||||| ||||||||||| || |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26166377 |
atggacaacaatgaacaacacaaaacacgtttgatataaaaaatgaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaact |
26166278 |
T |
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| Q |
114 |
ctatctttatacccatatattctcttccaagttgaataatgaattcagtaaattttgcc |
172 |
Q |
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| T |
26166277 |
ctatctttatatccatatattctcttccaagttgaataataaattcagtaaattttgcc |
26166219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 270
Target Start/End: Original strand, 42345742 - 42345911
Alignment:
| Q |
101 |
tcatattcaaactctatctttatacccatatattctcttccaagttgaataatgaattcagtaaattttgccaaaatttggcactcttcatgtgttttga |
200 |
Q |
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| T |
42345742 |
tcatattcaaactcaaactttatatgactatattttcttcctagttgaatcatgaattcagtgaatttggtaaaagtttgacactcttcatgtgttttga |
42345841 |
T |
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| Q |
201 |
cctctgaaacaaaaccatgaatgaccaattttttcaggttgggacatctttccaaaagtccatctaccca |
270 |
Q |
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| T |
42345842 |
tctcagcaacatagccataaatgaccattttttttagattaggacatccttccaaaagtccagctaccca |
42345911 |
T |
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