View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_127 (Length: 300)
Name: NF9795A_low_127
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_127 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 16781507 - 16781231
Alignment:
| Q |
11 |
cacagagaccgaagtagttggcctgggaccaccaggaaccaaaggagcactggaaggccttgacatcatagtcacttgtgcaataggtttttcggttggt |
110 |
Q |
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| T |
16781507 |
cacagagaccgaagtagttggcctgggaccaccaggaaccaaaggagcactggaaggccttgacatcatagtcacttgtgcaataggtttttcggttggt |
16781408 |
T |
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| Q |
111 |
cttggaggtgaagtcttctggatttctgttttaggcacaattgttggttgtgaagcagacgttaaagatgaagatgtatctttacctgtctgttgtgtga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16781407 |
cttggaggtgaagtcttctggatttctgttttaggcacaattgttggttgtgaagcagacgttaaagatgaagatgtatctttacctgtctgttgtgtga |
16781308 |
T |
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| Q |
211 |
cactaaaagatgttttcctgacattaacaggtgagggtaagtttctagaaggactcctcggcgaggatggccctact |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16781307 |
cactaaaagatgttttcctgacattaacaggtgagggtaagtttctagaaggactcctcggcgaggatggccctact |
16781231 |
T |
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