View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_118 (Length: 309)

Name: NF9795A_low_118
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_118
NF9795A_low_118
[»] chr7 (23 HSPs)
chr7 (7-309)||(48001098-48001398)
chr7 (15-309)||(13645065-13645357)
chr7 (7-309)||(14102071-14102371)
chr7 (7-309)||(14412088-14412388)
chr7 (39-309)||(30846545-30846817)
chr7 (15-292)||(19072495-19072770)
chr7 (20-230)||(31512839-31513049)
chr7 (78-309)||(11886104-11886334)
chr7 (6-212)||(47751003-47751209)
chr7 (20-127)||(38555127-38555234)
chr7 (71-167)||(12027561-12027657)
chr7 (19-100)||(11886020-11886101)
chr7 (20-98)||(30845988-30846067)
chr7 (21-100)||(14101486-14101566)
chr7 (21-100)||(14411503-14411583)
chr7 (7-100)||(13644471-13644565)
chr7 (7-76)||(38555367-38555436)
chr7 (132-178)||(13644590-13644636)
chr7 (132-178)||(14101591-14101637)
chr7 (132-178)||(14411608-14411654)
chr7 (132-178)||(11886758-11886804)
chr7 (132-178)||(30846094-30846140)
chr7 (132-176)||(38555273-38555317)
[»] chr8 (46 HSPs)
chr8 (20-309)||(36595668-36595956)
chr8 (7-309)||(16939999-16940299)
chr8 (20-309)||(3085578-3085867)
chr8 (20-309)||(37655974-37656262)
chr8 (20-290)||(36345677-36345941)
chr8 (7-230)||(7121586-7121809)
chr8 (15-309)||(35206382-35206675)
chr8 (7-309)||(13782285-13782585)
chr8 (16-309)||(39512938-39513227)
chr8 (15-307)||(41471150-41471440)
chr8 (20-309)||(38133869-38134148)
chr8 (20-309)||(22961229-22961514)
chr8 (7-309)||(43520505-43520799)
chr8 (65-309)||(39208142-39208383)
chr8 (103-309)||(34892064-34892269)
chr8 (121-309)||(45410270-45410454)
chr8 (8-100)||(3086361-3086453)
chr8 (7-98)||(13783039-13783131)
chr8 (7-98)||(34892740-34892832)
chr8 (7-98)||(40740956-40741048)
chr8 (15-100)||(41471965-41472051)
chr8 (7-98)||(37656737-37656829)
chr8 (20-100)||(35205877-35205958)
chr8 (132-178)||(7121069-7121115)
chr8 (132-178)||(34892677-34892723)
chr8 (132-178)||(39512483-39512529)
chr8 (132-178)||(40741075-40741121)
chr8 (13-100)||(3641702-3641789)
chr8 (32-98)||(16939455-16939522)
chr8 (15-100)||(7120958-7121044)
chr8 (132-178)||(39207805-39207851)
chr8 (7-76)||(39207686-39207755)
chr8 (32-87)||(29034124-29034180)
chr8 (132-178)||(16939549-16939595)
chr8 (7-100)||(20861832-20861926)
chr8 (132-178)||(37656664-37656710)
chr8 (132-178)||(41471894-41471940)
chr8 (7-100)||(42731875-42731969)
chr8 (277-309)||(7121523-7121555)
chr8 (132-176)||(36595196-36595240)
chr8 (136-178)||(3086291-3086333)
chr8 (7-98)||(39512363-39512456)
chr8 (1-34)||(43520823-43520856)
chr8 (20-100)||(44885752-44885833)
chr8 (277-309)||(3641796-3641828)
chr8 (16-52)||(36595049-36595085)
[»] chr3 (37 HSPs)
chr3 (7-309)||(20484682-20484984)
chr3 (20-307)||(32743244-32743529)
chr3 (7-309)||(11270007-11270307)
chr3 (15-309)||(45075404-45075696)
chr3 (7-309)||(7941729-7942029)
chr3 (7-309)||(26494225-26494526)
chr3 (7-309)||(4274672-4274973)
chr3 (7-309)||(32592267-32592564)
chr3 (20-309)||(39999302-39999589)
chr3 (7-309)||(19842554-19842852)
chr3 (15-309)||(10658881-10659166)
chr3 (7-212)||(6143721-6143926)
chr3 (71-309)||(4330952-4331185)
chr3 (7-98)||(20485462-20485554)
chr3 (8-98)||(30294803-30294894)
chr3 (7-98)||(7941160-7941252)
chr3 (7-98)||(45076180-45076272)
chr3 (7-98)||(51755781-51755873)
chr3 (20-98)||(32593043-32593122)
chr3 (7-100)||(31890171-31890265)
chr3 (132-178)||(7941279-7941325)
chr3 (132-178)||(30294730-30294776)
chr3 (132-178)||(51755708-51755754)
chr3 (132-178)||(4274229-4274275)
chr3 (15-100)||(6525247-6525333)
chr3 (7-100)||(14043827-14043921)
chr3 (132-178)||(20485389-20485435)
chr3 (132-178)||(32592970-32593016)
chr3 (32-100)||(4274135-4274204)
chr3 (132-178)||(26493723-26493769)
chr3 (132-178)||(45076105-45076151)
chr3 (7-100)||(31889520-31889610)
chr3 (20-100)||(34722288-34722368)
chr3 (20-76)||(50330649-50330705)
chr3 (46-100)||(26493643-26493698)
chr3 (1-32)||(32743202-32743233)
chr3 (277-309)||(34722375-34722407)
[»] chr5 (21 HSPs)
chr5 (20-309)||(41622210-41622499)
chr5 (33-309)||(35282117-35282391)
chr5 (7-230)||(30192542-30192765)
chr5 (15-309)||(35671140-35671433)
chr5 (43-303)||(2170298-2170557)
chr5 (7-230)||(42912677-42912901)
chr5 (80-309)||(20743709-20743938)
chr5 (20-117)||(20743932-20744029)
chr5 (7-100)||(40789136-40789230)
chr5 (39-124)||(13580638-13580724)
chr5 (20-129)||(13590537-13590647)
chr5 (20-100)||(35671960-35672041)
chr5 (12-98)||(41622979-41623066)
chr5 (132-178)||(2169854-2169900)
chr5 (7-100)||(30966573-30966667)
chr5 (7-76)||(2169737-2169806)
chr5 (132-178)||(40789066-40789112)
chr5 (132-178)||(41622906-41622952)
chr5 (132-167)||(13590395-13590430)
chr5 (26-100)||(30966158-30966233)
chr5 (132-178)||(35671889-35671935)
[»] chr4 (21 HSPs)
chr4 (20-309)||(37295931-37296221)
chr4 (7-309)||(48807109-48807409)
chr4 (20-309)||(37855896-37856183)
chr4 (33-230)||(2449412-2449609)
chr4 (20-309)||(43175770-43176050)
chr4 (7-172)||(18884362-18884527)
chr4 (114-309)||(28235009-28235199)
chr4 (7-309)||(11565916-11566203)
chr4 (115-309)||(16473007-16473195)
chr4 (7-98)||(43176559-43176651)
chr4 (7-98)||(48806535-48806627)
chr4 (20-98)||(2449013-2449092)
chr4 (7-98)||(6092686-6092778)
chr4 (33-100)||(37856673-37856741)
chr4 (132-178)||(6092613-6092659)
chr4 (132-178)||(48806654-48806700)
chr4 (262-307)||(7088423-7088468)
chr4 (132-176)||(43176488-43176532)
chr4 (44-93)||(27872443-27872492)
chr4 (122-150)||(28235261-28235289)
chr4 (277-309)||(43493027-43493059)
[»] chr2 (32 HSPs)
chr2 (7-309)||(28138630-28138930)
chr2 (7-309)||(2271462-2271760)
chr2 (20-309)||(14002556-14002843)
chr2 (20-309)||(37321863-37322147)
chr2 (7-230)||(28419457-28419681)
chr2 (22-230)||(12252292-12252500)
chr2 (7-309)||(29407591-29407910)
chr2 (7-191)||(33222666-33222850)
chr2 (26-309)||(23265965-23266233)
chr2 (70-309)||(40156622-40156855)
chr2 (111-309)||(6232762-6232956)
chr2 (246-309)||(23260959-23261022)
chr2 (7-100)||(37294379-37294473)
chr2 (49-137)||(37294787-37294875)
chr2 (7-100)||(28139485-28139579)
chr2 (20-86)||(6232702-6232768)
chr2 (25-98)||(1728832-1728906)
chr2 (7-98)||(29407022-29407115)
chr2 (132-178)||(1728933-1728979)
chr2 (127-168)||(16544503-16544544)
chr2 (12-76)||(16544426-16544490)
chr2 (7-107)||(16544540-16544640)
chr2 (132-178)||(29407142-29407188)
chr2 (134-178)||(37294501-37294545)
chr2 (250-305)||(14003012-14003067)
chr2 (132-178)||(28139414-28139460)
chr2 (7-100)||(30271124-30271217)
chr2 (20-100)||(37893329-37893410)
chr2 (132-176)||(23260514-23260558)
chr2 (43-100)||(33661876-33661934)
chr2 (20-100)||(30273080-30273160)
chr2 (277-309)||(37893290-37893322)
[»] chr1 (22 HSPs)
chr1 (20-309)||(42290333-42290620)
chr1 (46-309)||(7943031-7943292)
chr1 (7-302)||(12627864-12628158)
chr1 (21-309)||(21699939-21700226)
chr1 (7-309)||(5329736-5330037)
chr1 (50-309)||(51461149-51461407)
chr1 (7-226)||(18609703-18609918)
chr1 (7-107)||(13760967-13761067)
chr1 (20-100)||(12627276-12627357)
chr1 (161-222)||(13760897-13760958)
chr1 (169-230)||(41909623-41909684)
chr1 (7-98)||(21268697-21268789)
chr1 (7-100)||(41908992-41909086)
chr1 (132-178)||(41909111-41909157)
chr1 (20-100)||(5329160-5329241)
chr1 (132-178)||(12627382-12627428)
chr1 (132-178)||(5329266-5329312)
chr1 (7-99)||(15695844-15695937)
chr1 (7-55)||(41909680-41909728)
chr1 (135-178)||(21268624-21268667)
chr1 (16-63)||(48455527-48455574)
chr1 (244-289)||(12627630-12627675)
[»] scaffold0217 (1 HSPs)
scaffold0217 (46-309)||(8790-9052)
[»] chr6 (10 HSPs)
chr6 (20-309)||(11159149-11159441)
chr6 (7-283)||(35096688-35096963)
chr6 (7-212)||(15546208-15546412)
chr6 (20-212)||(117713-117905)
chr6 (7-309)||(17338502-17338787)
chr6 (114-309)||(26350387-26350576)
chr6 (109-309)||(32396374-32396563)
chr6 (20-98)||(11157799-11157878)
chr6 (132-178)||(11157905-11157951)
chr6 (122-150)||(26350297-26350325)
[»] scaffold0092 (1 HSPs)
scaffold0092 (20-230)||(54628-54838)
[»] scaffold0019 (1 HSPs)
scaffold0019 (112-309)||(127647-127842)
[»] scaffold0283 (1 HSPs)
scaffold0283 (20-100)||(1568-1649)
[»] scaffold1379 (1 HSPs)
scaffold1379 (277-309)||(324-356)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 48001398 - 48001098
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||| ||||||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||| |||||||||| ||||||||||||| ||||    
T  48001398 aaaacttcagcaattaactgccgaggaatttcaaacctgaaattaaataaagaaatacacttaaattttccttaattaaatttaattctttaatcctttt 48001299  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  48001298 aaggaattaaacataattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagtta 48001199  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    |||||| |||||||||||||||||          |  ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48001198 atggacctaaaatgatgattcaat--aaaaaaaatgcaacaataaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcat 48001101  T
Q  307 tga 309  Q
    |||    
T  48001100 tga 48001098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 13645357 - 13645065
Alignment:
Q  15 ggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaatt 114  Q
    |||| ||||||||||| |||||| ||| |||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||| ||||||    
T  13645357 ggcagttaactgccgaggaattttaaatctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatccttttaaggaatt 13645258  T
Q  115 aaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggactt 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |    
T  13645257 aaacataattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagttaatggacct 13645158  T
Q  215 aaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    ||||||||||||||||             |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13645157 aaaatgatgattcaataaaaaaaaag--caacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcattga 13645065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 14102371 - 14102071
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||    
T  14102371 aaaacttcggcagttaactgccgaggaatttcaaacatgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatcctttt 14102272  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  14102271 aaggaattaaacataattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagaaatgaataatatttgcaatcggtagtta 14102172  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    |||||| ||||||||| |||||||          |  ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  14102171 atggacctaaaatgataattcaat--aaaaaaaatgcaacaacaaaaacgttacaattgatagaataattatatttgtaattattagtaattaatttcat 14102074  T
Q  307 tga 309  Q
    |||    
T  14102073 tga 14102071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 14412388 - 14412088
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||    
T  14412388 aaaacttcggcagttaactgccgaggaatttcaaacttgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatcctttt 14412289  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  14412288 aaggaattaaacataattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagaaatgaataatatttgcaatcggtagtta 14412189  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    |||||| ||||||||| |||||||          |  ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  14412188 atggacctaaaatgataattcaat--aaaaaaaatgcaacaacaaaaacgttacaattgatagaataattatatttgtaattattagtaattaatttcat 14412091  T
Q  307 tga 309  Q
    |||    
T  14412090 tga 14412088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 39 - 309
Target Start/End: Complemental strand, 30846817 - 30846545
Alignment:
Q  39 aaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaacataattatt---tttatgat 135  Q
    |||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||||||||   ||||||||    
T  30846817 aaacctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatccttttaaggaattaaacataattattatttttatgat 30846718  T
Q  136 ttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatgatgattcaatnnnnn 235  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||         
T  30846717 ttcattcatatgattttgttgtcgtaaatgaagaaatatgagagatgaataatatctgcaatcggtagttaatggacctaaaatgatgattcaat-aaaa 30846619  T
Q  236 nnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
         |  ||||| | |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  30846618 ataaatgcaacaaaagaaacgttacaaatgatagaatagttatatttgtaattattagtaattaatttcattga 30846545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 19072495 - 19072770
Alignment:
Q  15 ggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaatt 114  Q
    |||| ||||||||||| || |||||||| ||||||||||||| |||||  |  ||||||||| |||||||||| ||||||||||||| ||||| ||||||    
T  19072495 ggcagttaactgccgaggattttcaaacatgaaattaaataaggaaatgcatataaattttccttaattaaatttaattctttaatccttttaaggaatt 19072594  T
Q  115 aaacataattatttttatgatttcattcatatga-ttttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggact 213  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||     
T  19072595 aaacataattatttttatgatttcattcatatgatttttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagttaatggacc 19072694  T
Q  214 taaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattatta 292  Q
    |||||||||||||||||          |  |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19072695 taaaatgatgattcaat---aaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattatta 19072770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 31513049 - 31512839
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||| ||||| ||||||  ||||| |||||||||||    
T  31513049 ttaactgccgaggaatttcaaacttgaaattaaataaggaaatacacctaaattttccttaattaaatttaattatttaattcttttaaggaattaaaca 31512950  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||| || ||||||||| ||||||    
T  31512949 taattatttttatgatttcattcatatgattttgttgccataaatgaaaaaatatgatagatgaataatatctgcaatcggtaattaatggacctaaaat 31512850  T
Q  220 gatgattcaat 230  Q
    |||||||||||    
T  31512849 gatgattcaat 31512839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 78 - 309
Target Start/End: Original strand, 11886104 - 11886334
Alignment:
Q  78 ttaattaaatgtaattctttaatc-tttttagggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatga 176  Q
    |||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  11886104 ttaattaaatttaattctttaatcctttttaaggaattaaacataattatttttatgatttcattcatatgattttgttgccctaaatgaagaaatatga 11886203  T
Q  177 gagatgaataatatatgcaatcgttagttaatggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaatt 276  Q
    |||||||||||||| |||||||  |||||||| ||| ||||||| |||||||||          |  |||||||||||||||||||||||||||||||||    
T  11886204 gagatgaataatatctgcaatctgtagttaat-gacctaaaatggtgattcaat-aaaaaaaaatgcaacaacaaaaacgttacaaatgatagaacaatt 11886301  T
Q  277 atatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||||||||||||||||||||||||    
T  11886302 atatttgtaattattagtaattaatttcattga 11886334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 47751209 - 47751003
Alignment:
Q  6 taaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttt 105  Q
    ||||| |||| || |||||||| || ||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||| ||||||||||| | |||    
T  47751209 taaaacttcgtcagttaactgcggaggaatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattcaatttaattctttaaacattt 47751110  T
Q  106 tagggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtt 205  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| || ||    
T  47751109 taaggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatctacattcggtaatt 47751010  T
Q  206 aatggac 212  Q
    |||||||    
T  47751009 aatggac 47751003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 38555127 - 38555234
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||  |||||||||| ||||||||||||| ||||| |||||||||||    
T  38555127 ttaactgccgaagaatttcaaacctgaaattaaataaggaaatacacctaaatttttcttaattaaatttaattctttaatccttttaaggaattaaaca 38555226  T
Q  120 taattatt 127  Q
    ||||||||    
T  38555227 taattatt 38555234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 12027561 - 12027657
Alignment:
Q  71 attttcgttaattaaatgtaattctttaatctttttagggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaa 167  Q
    |||||| |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  12027561 attttccttaattaaatttaattctttaatccttttaaggaattaaacataattatttttatgatttcattcatatgattttgttgccttaaatgaa 12027657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 11886020 - 11886101
Alignment:
Q  19 attaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaat 100  Q
    |||||||| ||| |||||||||||||||||||||||||  ||||| |||||||||||| |||||||||| ||||||||||||    
T  11886020 attaactgtcgaggaatttcaaacctgaaattaaataagaaaatacacctaaattttccttaattaaatttaattctttaat 11886101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 30845988 - 30846067
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| || |||||||| | |||||||||| ||||||||||    
T  30845988 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacataaattttcccttaattaaatttaattcttta 30846067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 14101486 - 14101566
Alignment:
Q  21 taactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    |||||||||| ||||||||||| |||||||||||||  ||||| ||||||||||| | |||||||||| ||||||||||||    
T  14101486 taactgccgaggaatttcaaacgtgaaattaaataagaaaatacacctaaattttcccttaattaaatttaattctttaat 14101566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 14411503 - 14411583
Alignment:
Q  21 taactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    |||||||||| ||||||||||| |||||||||||||  ||||| ||||||||||| | |||||||||| ||||||||||||    
T  14411503 taactgccgaggaatttcaaacgtgaaattaaataagaaaatacacctaaattttcccttaattaaatttaattctttaat 14411583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 13644471 - 13644565
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    |||| ||||||| ||||| ||| | |||||||||| |||||||||||||| |||||| ||||||||||| | | |||||||| ||||||||||||    
T  13644471 aaaacttcggcagttaaccgccaaagaatttcaaatctgaaattaaataaggaaatacacctaaattttccctgaattaaatttaattctttaat 13644565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 38555436 - 38555367
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttc 76  Q
    |||| ||||||| |||||||||||  |||||||||||| ||||||||||| |||||| ||||||||||||    
T  38555436 aaaacttcggcagttaactgccgaaaaatttcaaacctaaaattaaataaggaaatacacctaaattttc 38555367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 13644590 - 13644636
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||    
T  13644590 tgattttattcatataattttgttgccataaatgaagaaatatgaga 13644636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 14101591 - 14101637
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    |||||||||| |||| ||||||||| |||||||||||||||||||||    
T  14101591 tgatttcatttatataattttgttgccataaatgaagaaatatgaga 14101637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 14411608 - 14411654
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    |||||||||| |||| ||||||||| |||||||||||||||||||||    
T  14411608 tgatttcatttatataattttgttgccataaatgaagaaatatgaga 14411654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 11886804 - 11886758
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    |||||||||| | || ||||||||| |||||||||||||||||||||    
T  11886804 tgatttcattaaaataattttgttgccataaatgaagaaatatgaga 11886758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 30846094 - 30846140
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| ||||||||| ||||| | |||||||||||||    
T  30846094 tgatttcattcatataattttgttgccataagttaagaaatatgaga 30846140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 38555317 - 38555273
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatga 176  Q
    ||||||||||||||| ||||| ||  |||||||||||||||||||    
T  38555317 tgatttcattcatataattttattaccataaatgaagaaatatga 38555273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 46)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 36595956 - 36595668
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||||||||||| ||| |||||||||||||||||||  ||||||||||    
T  36595956 ttaactgccgaggaatttcaaacctgaaattaaataagaaaatacacctaaattttcgttaatttaatttaattctttaatctttttaatgaattaaaca 36595857  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  36595856 taattatttttgtgatttcattcgtatgattttgttgtcataaatgaagaaatatgagagatgaataatatctgcaatcgttagttaatggacctaaaat 36595757  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    ||||| |||||          | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36595756 gatgagtcaat-aaaaaaaaatgtaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcattga 36595668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 16940299 - 16939999
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||    
T  16940299 aaaatttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatcatttt 16940200  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| ||||||    
T  16940199 aaggaattaaaaataattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctacaatcgatagtta 16940100  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    |||||| |||||||||||||||||          |  ||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  16940099 atggacctaaaatgatgattcaat--aaaaaaaatgcaacaacaaaaatgttacaaatgataaaataattatatttgtaattattagtaattaatttcat 16940002  T
Q  307 tga 309  Q
    |||    
T  16940001 tga 16939999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 3085578 - 3085867
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| ||||||||| | ||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||| | |||||||||    
T  3085578 ttaactgccgaggaatttcaaccttgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatccttttaagaaattaaaca 3085677  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  3085678 taattatttttataatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagttaatggacttaaaat 3085777  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    ||||||| |||          |  |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3085778 gatgatttaatacaaaaaaaatgcaacaacaaaaacgttataaatgatagaataattatatttgtaattattagtaattaatttcattga 3085867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 37655974 - 37656262
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||||  |||||||||| ||| ||||||||||||||| |||||||||||    
T  37655974 ttaactgccgaggaatttcaaacttgaaattaaataaggaaatacacctaaatttttcttaattaaatttaaatctttaatctttttaaggaattaaaca 37656073  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| ||||||    
T  37656074 taattatttttatgatttcattcgtatgattttgttgccataaatgaagaaatatgaaagatgaataatatctgcaatcggtagttaatggacctaaaat 37656173  T
Q  220 gatga-ttcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    ||||| ||||||          |  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37656174 gatgatttcaat--aaaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcattga 37656262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 36345941 - 36345677
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||    
T  36345941 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatcttttaagg-aattaaaca 36345843  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||    
T  36345842 taattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagttaatggacctaaaat 36345743  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattat 290  Q
    |||||||||||           |   |||||||||||||||||||||||||| ||||||||||||||||||    
T  36345742 gatgattcaataaaaaa-----aatgcaacaaaaacgttacaaatgatagaataattatatttgtaattat 36345677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 7121809 - 7121586
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||||||| |||||||||||||||| |||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||    
T  7121809 aaaacttcggcagttaactgccgaggaatttcaaacctgaacttaaataaggaaatacacctaaattttccttaattaaatttaattctttaatcctttt 7121710  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  7121709 aaggaattaaacataattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagtta 7121610  T
Q  207 atggacttaaaatgatgattcaat 230  Q
    |||||| |||||||||||||||||    
T  7121609 atggacctaaaatgatgattcaat 7121586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 35206675 - 35206382
Alignment:
Q  15 ggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaatt 114  Q
    |||| ||||||| |||  ||||| |||||||||||||||||| |||||| |||||||||||  |||||||||| ||||||||||||| ||||| ||||||    
T  35206675 ggcagttaactgtcgagaaattttaaacctgaaattaaataaggaaatacacctaaatttttcttaattaaatttaattctttaatccttttaaggaatt 35206576  T
Q  115 aaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggactt 214  Q
    |||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||  |||||||||||| |    
T  35206575 aaacataattctttttatgattttattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatccatagttaatggacct 35206476  T
Q  215 aaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    ||||||||||||||||          |  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  35206475 aaaatgatgattcaat-aaaaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaattttattga 35206382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 13782285 - 13782585
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |  ||||||||| |||||||||| ||||||||||||| ||||    
T  13782285 aaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacaaataaattttccttaattaaatttaattctttaatcatttt 13782384  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |||||||  | ||||    
T  13782385 aaggaattaaacataattatttttatgatttcattcatatgattttgttgccataaataaagaaatatgatagatgaataatatctgcaatcagtggtta 13782484  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    || ||  |||||||||||||||||          |  |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||    
T  13782485 atagatctaaaatgatgattcaat--aaaaaaaatgcaacaacaaaaacgttacaaacgatataataattatatttgtaattattagtaattaatttcat 13782582  T
Q  307 tga 309  Q
    |||    
T  13782583 tga 13782585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 39513227 - 39512938
Alignment:
Q  16 gcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaatta 115  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||| |||||  |||||||||| ||||||||||||||||||| |||||||    
T  39513227 gcaattaactgtcgaggaatttcaaacctgaaattaaataaggaaatacacctatatttttcttaattaaatttaattctttaatctttttaaggaatta 39513128  T
Q  116 aacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggactta 215  Q
    ||||||||||||| ||||||||||||  ||||||||||||| |||||||||||||| ||||||   |||||||||||||||||| |||||||||||| ||    
T  39513127 aacataattatttctatgatttcatttctatgattttgttgccataaatgaagaaacatgaga---gaataatatatgcaatcggtagttaatggaccta 39513031  T
Q  216 aaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||||||              ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39513030 aaatgatgattcaataaaaaaaaaa-gccacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcattga 39512938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 15 - 307
Target Start/End: Original strand, 41471150 - 41471440
Alignment:
Q  15 ggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaatt 114  Q
    |||| |||||| ||||  ||||| ||| || ||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||| ||||| ||||||    
T  41471150 ggcagttaactaccgagaaattttaaatctaaaattaaataaggaaatatacataaattttccttaattaaatttaattctttaatccttttaaggaatt 41471249  T
Q  115 aaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggactt 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| |    
T  41471250 aaacataattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagttaatagacct 41471349  T
Q  215 aaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcatt 307  Q
    ||||||||||||||||          |  |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||    
T  41471350 aaaatgatgattcaat--aaaaaaaatgcaacaacaaaaacgttacaaacgatagaataattatatttgtaattattattaattcatttcatt 41471440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 38134148 - 38133869
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||| |||||||||| |||||||||        || | ||||| |||    
T  38134148 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacataaattttccttaattaaatttaattcttt--------taagaaattataca 38134057  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || ||||||    
T  38134056 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatctgcaatcggtagttaatgaacctaaaat 38133957  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||          |  |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  38133956 gatgattcaat--aaaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaactaatttcattga 38133869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 22961514 - 22961229
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||| |||||||||| ||||||||||| ||||| ||| |||||||||    
T  22961514 ttaactgccgaggaatttcaaacctgaaattacataaggaaatacacctaaattttccttaattaaatttaattctttaaccttttaagg-aattaaaca 22961416  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||    
T  22961415 taattatttttatgatttcattcatatgattttgttgctataaatgaagaaatatgagagatgaataatatctgcaat-ggtagttaatggacctaaaat 22961317  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||| ||||          |  ||||||| ||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||    
T  22961316 gatgatgcaat--aaaaaaaatgcaacaacagaaatgttacaaatgatagaataaatatatttgtaattattaataattaatttcattga 22961229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 43520799 - 43520505
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| |||||| |||| ||||||||||| |||||||||||||  ||||  || ||||||||  |||||||||| ||||||||||||| ||||    
T  43520799 aaaacttcggcagttaactaccgaggaatttcaaacatgaaattaaataagaaaatgcacataaatttttcttaattaaatttaattctttaatcctttt 43520700  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | ||||||||||||||||||||| |||||||     |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  43520699 aaggaattaaacataattattttaatgattt-----atatgattttgttgtcataaatgaagaaatatgagagatgaataatatctgcaatcggtagtta 43520605  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    |||||| |||||||||||||||||          |  |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||    
T  43520604 atggacctaaaatgatgattcaat---aaaaaaatgcaacaacaaaaacgttaaaaatgatagaataattatatttgtaattattattaattaatttcat 43520508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 65 - 309
Target Start/End: Complemental strand, 39208383 - 39208142
Alignment:
Q  65 acctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaat 164  Q
    |||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||    
T  39208383 acctaaattttccttaattaaatataattctttaatccttttaaggaattaaacataattatttttatgatttcattcatataattttgttgcaataaat 39208284  T
Q  165 gaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaat 264  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||||  |||||||||||||||||          |  |||||||||||||||||||||    
T  39208283 gaagaaatataagagatgaataatatctgcaatcggtagttaatggatctaaaatgatgattcaat---aaaaaaatgcaacaacaaaaacgttacaaat 39208187  T
Q  265 gatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    ||||||| ||||| |||| |||||||||| ||| |||||||||||    
T  39208186 gatagaataattaaatttataattattagcaatcaatttcattga 39208142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 103 - 309
Target Start/End: Original strand, 34892064 - 34892269
Alignment:
Q  103 ttttagggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgtta 202  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| ||    
T  34892064 ttttaaggaattaaacataattatttttatgattccattcatatgattttgttgccataaatgaagaaatataagagatgaataatatctgcaatcggta 34892163  T
Q  203 gttaatggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatt 302  Q
    |||||||||| |||||||||||||||||          |  ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  34892164 gttaatggacctaaaatgatgattcaat-aaaaaaaaatgcaacaacaaaaacgttacaaataatagaataattatatttgtaattattagtaattaatt 34892262  T
Q  303 tcattga 309  Q
    |||||||    
T  34892263 tcattga 34892269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 121 - 309
Target Start/End: Original strand, 45410270 - 45410454
Alignment:
Q  121 aattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatg 220  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  45410270 aattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatttgcaatcggtagttaatggacctaaaatg 45410369  T
Q  221 atgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    ||||||||||           |   ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45410370 atgattcaataaaaaaa----aatgcaacaaaaacgtttcaaatgatagaataattatatttgtaattattagtaattaatttcattga 45410454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 3086453 - 3086361
Alignment:
Q  8 aaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaat 100  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||    
T  3086453 aaatttcggcagttaactgccgaggaatttcaaacttgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaat 3086361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 13783131 - 13783039
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    |||| ||||||| ||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||    
T  13783131 aaaacttcggcagttaactgtcgaagaatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattcttta 13783039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 34892832 - 34892740
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||| ||||    
T  34892832 aaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattattta 34892740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 40740956 - 40741048
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    |||| ||||||| ||||||||||| || |||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||    
T  40740956 aaaacttcggcagttaactgccgaggattttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattcttta 40741048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 41472051 - 41471965
Alignment:
Q  15 ggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaa-ttttcgttaattaaatgtaattctttaat 100  Q
    |||| ||||||||||| ||||||||||||| ||||||||||| |||||| ||||||| ||||| |||||||||| ||||||||||||    
T  41472051 ggcagttaactgccgaggaatttcaaaccttaaattaaataaggaaatacacctaaatttttccttaattaaatttaattctttaat 41471965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 37656829 - 37656737
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    |||| ||||||| ||||||||| | ||||||||||| ||||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||    
T  37656829 aaaacttcggcagttaactgccaaggaatttcaaacatgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattcttta 37656737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 35205877 - 35205958
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    ||||||||||| ||||||||||| | ||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||||    
T  35205877 ttaactgccgaggaatttcaaacttaaaattaaataaggaaatacacctaaattttcccttaattaaatttaattctttaat 35205958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 7121069 - 7121115
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  7121069 tgatttcattcatataattttgttgtcataaatgaagaaatatgaga 7121115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 34892723 - 34892677
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  34892723 tgatttcattcatataattttgttgtcataaatgaagaaatatgaga 34892677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 39512483 - 39512529
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  39512483 tgatttcattcatataattttgttgtcataaatgaagaaatatgaga 39512529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 40741075 - 40741121
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  40741075 tgatttcattcatataattttgttgtcataaatgaagaaatatgaga 40741121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 3641702 - 3641789
Alignment:
Q  13 tcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaat 100  Q
    |||| ||||||||||||||||| || |||| ||||||||||||| |||||| ||  |  ||||| |||||||||| ||||||||||||    
T  3641702 tcgggaattaactgccgatgaacttaaaacttgaaattaaataaggaaatacactaagtttttccttaattaaatttaattctttaat 3641789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 16939455 - 16939522
Alignment:
Q  32 gaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    ||||||||||||||||||||||||| |||||| | ||||||||| | |||||||||| ||||||||||    
T  16939455 gaatttcaaacctgaaattaaataaggaaatacaactaaattttcccttaattaaatttaattcttta 16939522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 7120958 - 7121044
Alignment:
Q  15 ggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    |||| |||||| | || ||||||||||||| ||||||||||| | |||| ||||||||||| | |||||||||| ||||||||||||    
T  7120958 ggcagttaactactgaagaatttcaaacctaaaattaaataaggtaatacacctaaattttcccttaattaaatttaattctttaat 7121044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 39207805 - 39207851
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||    
T  39207805 tgatttcattcatataatttcgttgtcataaatgaagaaatatgaga 39207851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 39207686 - 39207755
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttc 76  Q
    |||| |||| || ||||||||||| |||||| ||| |||||||||||||| |||||| ||||||||||||    
T  39207686 aaaacttcgacagttaactgccgaggaattttaaatctgaaattaaataaggaaatacacctaaattttc 39207755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 29034124 - 29034180
Alignment:
Q  32 gaatttcaaacctgaaattaaataatgaaatatacctaaa-ttttcgttaattaaat 87  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||    
T  29034124 gaatttcaaacctgaaattaaataaggaaatacacctaaatttttctttaattaaat 29034180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 16939549 - 16939595
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||    
T  16939549 tgattttattcatataattttgttgccataaatgaagaaatatgaga 16939595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 20861926 - 20861832
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaa-attttcgttaattaaatgtaattctttaat 100  Q
    |||| ||| ||| ||||||||| |  |||||||| ||||||||||||||| |||||| | ||||  ||||| |||||||||| ||||||||||||    
T  20861926 aaaacttcagcagttaactgccaagaaatttcaagcctgaaattaaataaggaaatacatctaagtttttccttaattaaatttaattctttaat 20861832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 37656710 - 37656664
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    |||||||||||| || ||||||||| |||||||||||||||||||||    
T  37656710 tgatttcattcacataattttgttgccataaatgaagaaatatgaga 37656664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 41471940 - 41471894
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||    
T  41471940 tgattttattcatataattttgttgccataaatgaagaaatatgaga 41471894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 42731875 - 42731969
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaa-attttcgttaattaaatgtaattctttaat 100  Q
    |||| ||||||| |||||||||||  |||||||| ||| ||||| |||||||||||| | ||||  ||||| |||||||||| |||||| |||||    
T  42731875 aaaacttcggcagttaactgccgagaaatttcaagccttaaattcaataatgaaatacatctaagtttttccttaattaaatttaattccttaat 42731969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 7121555 - 7121523
Alignment:
Q  277 atatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||||||||||||||||||||||||    
T  7121555 atatttgtaattattagtaattaatttcattga 7121523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 36595196 - 36595240
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatga 176  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||    
T  36595196 tgatttcattcatataattttgttaccataaatgaagaaatatga 36595240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 3086333 - 3086291
Alignment:
Q  136 ttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||    
T  3086333 ttcattcatataattttgttggcataaatgaagaaatgtgaga 3086291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 39512363 - 39512456
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaa--ttttcgttaattaaatgtaattcttta 98  Q
    |||||||||||| |||| ||  ||  ||||| |||||||||||||||||| |||||| | |||||  ||||| |||||||||| ||||| ||||    
T  39512363 aaaatttcggcagttaattgttgagaaattttaaacctgaaattaaataaggaaatacatctaaattttttctttaattaaatttaattattta 39512456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 43520823 - 43520856
Alignment:
Q  1 ttctttaaaatttcggcaattaactgccgatgaa 34  Q
    |||||||||||||||||| |||||||||||||||    
T  43520823 ttctttaaaatttcggcagttaactgccgatgaa 43520856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 44885752 - 44885833
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaa-attttcgttaattaaatgtaattctttaat 100  Q
    |||||||||||  |||||||| |||||||||||||||  ||||| | ||||  ||||| |||||||||| |||||| |||||    
T  44885752 ttaactgccgagaaatttcaagcctgaaattaaataagaaaatacatctaagtttttccttaattaaatttaattccttaat 44885833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 3641796 - 3641828
Alignment:
Q  277 atatttgtaattattagtaattaatttcattga 309  Q
    ||||||||||||||| |||||||||||||||||    
T  3641796 atatttgtaattatttgtaattaatttcattga 3641828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 36595049 - 36595085
Alignment:
Q  16 gcaattaactgccgatgaatttcaaacctgaaattaa 52  Q
    |||| |||||||||| |||||||||||||||||||||    
T  36595049 gcaaataactgccgaggaatttcaaacctgaaattaa 36595085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 20484682 - 20484984
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| |||||||||||| ||||| ||| | |||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||    
T  20484682 aaaacttcggcagttaactgccgattaattttaaatcagaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatcctttt 20484781  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||||    
T  20484782 aaggaattaaacataattatttttatgatttcattcatataattttgttgtcataaataaagaaatatgagagatgaataatatctgcaattggtagtta 20484881  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    |||||| |||||||||||||||||          |  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20484882 atggacctaaaatgatgattcaataaaaaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcat 20484981  T
Q  307 tga 309  Q
    |||    
T  20484982 tga 20484984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 32743244 - 32743529
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||| ||||||| |||    
T  32743244 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatccttttaaggaattataca 32743343  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| ||||||    
T  32743344 taattatttttatgatttcattcatatgattttgttgccataaataaagaaatatgagagatgaataatatctgcaatcggtagttaatggacctaaaat 32743443  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcatt 307  Q
    |||||||||||          |  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32743444 gatgattcaat--aaaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcatt 32743529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 11270307 - 11270007
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| |||||||||||  |||||||||||| ||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||    
T  11270307 aaaacttcggcagttaactgccgagaaatttcaaacctaaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatcctttt 11270208  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| || |||    
T  11270207 aaggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgatatatgaataatatctgcaatcggtaatta 11270108  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    |||||| |||||||||||||||||          |  |||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||    
T  11270107 atggacctaaaatgatgattcaat--aaaaaaaatgcaacaacaaaaacgttagaaaggatagaataattatatttgtaattattagtaattaatttcat 11270010  T
Q  307 tga 309  Q
    |||    
T  11270009 tga 11270007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 45075404 - 45075696
Alignment:
Q  15 ggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaatt 114  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| || ||||||| ||||||||||||| ||||| ||||||    
T  45075404 ggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttccttgattaaatttaattctttaatccttttaaggaatt 45075503  T
Q  115 aaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggactt 214  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |    
T  45075504 aaacataattatttttatgatttaattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatgtgcaatcggtagttaatggacct 45075603  T
Q  215 aaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    ||||||| ||||| ||             |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  45075604 aaaatgacgattctataaaaaaaaat--gaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtgattaatttcattga 45075696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 7942029 - 7941729
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||||||||||| |||| |||||| |||||||||||||||||||||||||  ||||| |||||||||||| |||||||||| ||||||||||||| ||||    
T  7942029 aaaatttcggcagttaaatgccgaggaatttcaaacctgaaattaaataagaaaatacacctaaattttccttaattaaatttaattctttaatcctttt 7941930  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| | |||||| ||||||    
T  7941929 aaggaattaaacataattatttttataatttcattcatatgattttgttgccataaatgaaaaaatatgagagatgaataatatctccaatcggtagtta 7941830  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    || ||| |||||||| ||||||||          |  ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  7941829 attgacctaaaatgacgattcaat--aaaaaaaatgcaacaacaaaaacgttacaaatgatataataattatatttgtaattattagtaattaatttcat 7941732  T
Q  307 tga 309  Q
    |||    
T  7941731 tga 7941729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 26494526 - 26494225
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||| ||| |||||||||| || ||||| ||||| | |||| |||||||||||| |||||||||| ||||||||||||| ||||    
T  26494526 aaaacttcggcagttaactggcgaggaatttcaaatctaaaattgaataaggtaatacacctaaattttccttaattaaatttaattctttaatcctttt 26494427  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  26494426 aaggaattaaacataattatttttatgatttcattaatatgattttgttgccataaatgaagaaatatgagggatgaataatatctgcaatcggtagtta 26494327  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    |||||  |||||||||||||||||          || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  26494326 atggatctaaaatgatgattcaat-aaaaaaaaatacaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaattttat 26494228  T
Q  307 tga 309  Q
    |||    
T  26494227 tga 26494225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 4274973 - 4274672
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||| | |||||||||||  |||||||||||||||||||||||| |||||| |||||||||| | | |||||||| ||||| ||||||| ||||    
T  4274973 aaaacttcggtagttaactgccgaaaaatttcaaacctgaaattaaataaggaaatacacctaaatttccctgaattaaatttaattatttaatcctttt 4274874  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  4274873 aagtaattaaacgtaattctttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatctgcaatcggtagtta 4274774  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    ||| || |||||||||||||||||          |  ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  4274773 atgaacctaaaatgatgattcaat-aaaaaaaaatgcaacaacaaatacgttacaaatgatagaataattatatttgtaattattagtaattgatttcat 4274675  T
Q  307 tga 309  Q
    |||    
T  4274674 tga 4274672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 32592267 - 32592564
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| |||| || ||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||  |||||||||||| ||||    
T  32592267 aaaacttcgacagttagctgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattaaattcaattctttaatcctttt 32592366  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | | ||||||||||||||    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  32592367 aagcaattaaacataatt----ttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagtta 32592462  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    |||||| |||||||||||||||||          |  ||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32592463 atggacctaaaatgatgattcaat-aacaaaaaatgcaacaacaaaaacactacaaatgatagaataattatatttgtaattattagtaattaatttcat 32592561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 39999589 - 39999302
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| ||| ||||||||| |||||||||||  ||||| |||||||||||| |||||||||| ||||||||||||| ||||| | ||||| |||    
T  39999589 ttaactgccgaggaaattcaaaccttaaattaaataagaaaatacacctaaattttccttaattaaatttaattctttaatccttttaagaaattataca 39999490  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||    
T  39999489 taattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagataaataatatctgcaatcggtagttaatggacctaaaat 39999390  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||          |  |||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||| ||||    
T  39999389 gatgattcaat--aaaaacaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattatttttaattaatttcgttga 39999302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 19842554 - 19842852
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| |||| || ||||||||||  ||||||||||| ||||||||||||| |||||  || ||||||||| |||||||||| ||||||||||||| || |    
T  19842554 aaaacttcgacagttaactgccgg-gaatttcaaacatgaaattaaataaggaaatgcacataaattttccttaattaaatttaattctttaatccttgt 19842652  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| || |||||||| ||||||    
T  19842653 aaggaattaaacataattatttttatgatttcattcatatgattttgttgcaataaatgaagaaatatgagagatgaataaaatctgcaatcggtagtta 19842752  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    |||||| |||||||||||||||||          |  ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||    
T  19842753 atggacctaaaatgatgattcaat---aaaaaaatgcaacaacaaaaacgttacaaatgataaaataattatatttgtaattattattaattaatttcat 19842849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 10658881 - 10659166
Alignment:
Q  15 ggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaatt 114  Q
    |||| ||||||||||| |||||||||| |||||||||||||| |||||| |||||| ||||| ||         ||||||||||||| ||||| ||||||    
T  10658881 ggcagttaactgccgaggaatttcaaatctgaaattaaataaggaaatacacctaagttttccttt--------taattctttaatccttttaaggaatt 10658972  T
Q  115 aaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggactt 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||||||||  |    
T  10658973 aaacataattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctacaatcggtagttaatggatct 10659072  T
Q  215 aaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    ||||||||||||||||          |  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10659073 aaaatgatgattcaat-aaaaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcattga 10659166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 6143721 - 6143926
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||||||| |||||| |||||||||||||||||| ||| || |||||||||||  |||||||||| ||||| ||||||| ||||    
T  6143721 aaaacttcggcagttaactgccgaggaattttaaacctgaaattaaataaggaactacacctaaatttttcttaattaaatttaattatttaatcctttt 6143820  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | |||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  6143821 aaggaattaaacataattatttttatcatttcattcagatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagtta 6143920  T
Q  207 atggac 212  Q
    ||||||    
T  6143921 atggac 6143926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 71 - 309
Target Start/End: Original strand, 4330952 - 4331185
Alignment:
Q  71 attttcgttaattaaatgtaattctttaatctttttagggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaa 170  Q
    |||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  4330952 attttccttaattaaatttaattctttaatcttttaagg-aattaaacataattatttttatgatttcattcatatgattttgttgccttaaatgaagaa 4331050  T
Q  171 atatgagagatgaataatatatgcaatcgttagttaatggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgataga 270  Q
    ||||||||||||||||||||  ||||||| |||||||||||| ||||| |||||||||||           |   |||||||||||||  ||||||||||    
T  4331051 atatgagagatgaataatatccgcaatcggtagttaatggacctaaaaagatgattcaataaaaaaa----aaggcaacaaaaacgttttaaatgataga 4331146  T
Q  271 acaattatatttgtaattattagtaattaatttcattga 309  Q
    | |||||||||||||||||||||||||||||||||||||    
T  4331147 ataattatatttgtaattattagtaattaatttcattga 4331185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 20485554 - 20485462
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||    
T  20485554 aaaacttcggcaattaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattcttta 20485462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 30294894 - 30294803
Alignment:
Q  8 aaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaa-ttttcgttaattaaatgtaattcttta 98  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||  ||||||| ||||| |||||||||| ||||||||||    
T  30294894 aaatttcggcagttaactgccgatgaatttcaaacctgaaattaaataaggaaatgcacctaaatttttctttaattaaatttaattcttta 30294803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 7941160 - 7941252
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||    
T  7941160 aaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattcttta 7941252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 45076272 - 45076180
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||    
T  45076272 aaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattcttta 45076180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 51755873 - 51755781
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |  ||||||||| ||||||||||    
T  51755873 aaaacttcggcagttaactgccgaagaatttcaaacctgaaattaaataaggaaatacacctaaattttcccataattaaatttaattcttta 51755781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 32593122 - 32593043
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||| ||||    
T  32593122 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattattta 32593043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 31890265 - 31890171
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaa-attttcgttaattaaatgtaattctttaat 100  Q
    |||| ||||||| ||||||||||||||| || |||||||||||||||||| ||| || ||||||  ||||| |||||||||| ||||||||||||    
T  31890265 aaaacttcggcagttaactgccgatgaacttaaaacctgaaattaaataaggaagtacacctaagtttttccttaattaaatttaattctttaat 31890171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 7941279 - 7941325
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  7941279 tgatttcattcatataattttgttgtcataaatgaagaaatatgaga 7941325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 30294776 - 30294730
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  30294776 tgatttcattcatataattttgttgtcataaatgaagaaatatgaga 30294730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 51755754 - 51755708
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  51755754 tgatttcattcatataattttgttgtcataaatgaagaaatatgaga 51755708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 4274229 - 4274275
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  4274229 tgatttcagtcatataattttgttgtcataaatgaagaaatatgaga 4274275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 6525333 - 6525247
Alignment:
Q  15 ggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaa-ttttcgttaattaaatgtaattctttaat 100  Q
    |||| ||||||| ||| ||| || ||||||||| ||||||||||||||| | ||||| ||||| |||||||||| ||||||||||||    
T  6525333 ggcagttaactgtcgaagaacttaaaacctgaacttaaataatgaaatacatctaaatttttccttaattaaatttaattctttaat 6525247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 14043921 - 14043827
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaa-attttcgttaattaaatgtaattctttaat 100  Q
    |||| ||||||| |||||||||||  |||||||| ||||||||||||||| |||||| | ||||  ||||| |||||||||| |||||| |||||    
T  14043921 aaaacttcggcagttaactgccgagaaatttcaagcctgaaattaaataaggaaatacatctaagtttttccttaattaaatttaattccttaat 14043827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 20485435 - 20485389
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  20485435 tgatttcattcatataattttgttgccataaatgaagaaatatgaga 20485389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 32593016 - 32592970
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  32593016 tgatttcattcatataattttgttgccataaatgaagaaatatgaga 32592970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 4274135 - 4274204
Alignment:
Q  32 gaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    ||||||||||| ||||||||||||| |||||| ||| ||||||| | |||||||||| ||||||||||||    
T  4274135 gaatttcaaacttgaaattaaataaagaaatacacccaaattttccattaattaaatttaattctttaat 4274204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 26493723 - 26493769
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||    
T  26493723 tgattttattcatataattttgttgccataaatgaagaaatatgaga 26493769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 45076151 - 45076105
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  45076151 tgatttcattcatataattttgttgccataaattaagaaatatgaga 45076105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 31889520 - 31889610
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaa-attttcgttaattaaatgtaattctttaat 100  Q
    |||| |||||||||||||||||    || || ||||||||||||| |||| |||||| ||||||  ||||| |||||||||| ||||||||||||    
T  31889520 aaaacttcggcaattaactgcc----aacttaaaacctgaaattagataaggaaatacacctaagtttttccttaattaaatataattctttaat 31889610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 34722288 - 34722368
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaat 100  Q
    ||||||| ||| ||| || |||||||||||||||||| |||||| ||  |  ||||| |||||||||| ||||||||||||    
T  34722288 ttaactgtcgaagaacttaaaacctgaaattaaataaggaaatacactaagtttttccttaattaaatttaattctttaat 34722368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 50330649 - 50330705
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttc 76  Q
    ||||||||||| ||||||||||| ||||||||||||| |||||  || |||||||||    
T  50330649 ttaactgccgaggaatttcaaacatgaaattaaataaggaaatgcacataaattttc 50330705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 26493643 - 26493698
Alignment:
Q  46 aaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    ||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||||    
T  26493643 aaattaaataaggaaatacacctaaattttcctttaattaaatttaattctttaat 26493698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 32743233 - 32743202
Alignment:
Q  1 ttctttaaaatttcggcaattaactgccgatg 32  Q
    ||||||||||||||||||||||||||||||||    
T  32743233 ttctttaaaatttcggcaattaactgccgatg 32743202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 34722375 - 34722407
Alignment:
Q  277 atatttgtaattattagtaattaatttcattga 309  Q
    ||||||||||||||| |||||||||||||||||    
T  34722375 atatttgtaattatttgtaattaatttcattga 34722407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 41622210 - 41622499
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    |||||||||||  |||||||||||||||||||||||| |||||| |||||||||||  |||||||||| ||||||||||||| ||||| |||||||||||    
T  41622210 ttaactgccgagtaatttcaaacctgaaattaaataaggaaatacacctaaatttttcttaattaaatttaattctttaatccttttaaggaattaaaca 41622309  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| ||||||    
T  41622310 taattatttttatgatttcattcatatgattttgttgccataaatgaagaaatgtgagagatgaataatatctgcaatcggtagttaatggacctaaaat 41622409  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||          |  ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  41622410 gatgattcaataaaaaaaaaatgcaacaacaaaaacgttacaaatgatataataattatatttgtaattattagtaattaatttcattga 41622499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 33 - 309
Target Start/End: Complemental strand, 35282391 - 35282117
Alignment:
Q  33 aatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaacataattatttttat 132  Q
    |||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||    
T  35282391 aatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatccttttaaggaattaaacataatcatttttat 35282292  T
Q  133 gatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatgatgattcaatnn 232  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||||||||      
T  35282291 gatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtaattaatggacataaaatgatgattcaat-- 35282194  T
Q  233 nnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
            |  |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35282193 aaaaaaaatgcaacaacaaaaacgttagaaatgatagaataattatatttgtaattattagtaattaatttcattga 35282117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 30192542 - 30192765
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||| ||||    
T  30192542 aaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatataccaaaattttctttaattaaatttaattctttaatcctttt 30192641  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||| ||||||    
T  30192642 aaggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaaaaaatatgagagatgaataatatcagcaatcggtagtta 30192741  T
Q  207 atggacttaaaatgatgattcaat 230  Q
    |||||  |||||||||||||||||    
T  30192742 atggatctaaaatgatgattcaat 30192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 35671140 - 35671433
Alignment:
Q  15 ggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaatt 114  Q
    |||| ||||||||||| ||||||||||| |||| |||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||| ||||||    
T  35671140 ggcagttaactgccgaggaatttcaaacatgaacttaaataaggaaatacacctaaattttccttaattaaatttaattctttaatccttttaaggaatt 35671239  T
Q  115 aaacataattatttttatgatttcattcatatgattttgttgtcataaatg-aagaaatatgagagatgaataatatatgcaatcgttagttaatggact 213  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||||| |||||| | ||||||||||||     
T  35671240 aaacataattatttttatgatttcattcatatgatttttttgccataaatgaaaaaaatatgagagatgaataatatctgcaattgatagttaatggacc 35671339  T
Q  214 taaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||||||||          |  |||||||||||| |||||||||||| || |||||||||  ||| ||||||||||||||||||||||    
T  35671340 taaaatgatgattcaat--aaaaaaaatgcaacaacaaaaactttacaaatgataaaataattatattgataactattagtaattaatttcattga 35671433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 43 - 303
Target Start/End: Complemental strand, 2170557 - 2170298
Alignment:
Q  43 ctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaacataattatttttatgatttcattc 142  Q
    |||||||| ||||| |||||| |||||||  ||| || ||||||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||    
T  2170557 ctgaaattgaataaggaaatacacctaaaaattctttgattaaatttaattctttaatccttttaagaaattaaacataattatttttatgatttcattc 2170458  T
Q  143 atatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatgatgattcaatnnnnnnnnnnta 242  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| ||||||||| || |||||||||||||||||          |     
T  2170457 atatgattttgttgtcataaatgaaaaaatatgagagatgaataatatctgtaatcggtagttaatgaacctaaaatgatgattcaat-aaaaaaaaatg 2170359  T
Q  243 taacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaattt 303  Q
     |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  2170358 caacaacaaaaacgttacaaacgatagaataattatatttgtaattattagtaattaattt 2170298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 42912901 - 42912677
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaatt-ctttaatctttt 105  Q
    |||| ||||||| ||||||||||| ||||||||||||||||| ||||||| |||||| |||||||||||| |||||| ||| ||||| |||||||| |||    
T  42912901 aaaacttcggcagttaactgccgaagaatttcaaacctgaaactaaataaggaaatacacctaaattttccttaatttaatttaatttctttaatccttt 42912802  T
Q  106 tagggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtt 205  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||  || ||    
T  42912801 taaggaattaaacataattatttttatgatttcattcatatgattttgttgccataaatgaaaaaatatgatagatgaataatatctgcaatcagtaatt 42912702  T
Q  206 aatggacttaaaatgatgattcaat 230  Q
    ||||||| |||||||||||||||||    
T  42912701 aatggacctaaaatgatgattcaat 42912677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 80 - 309
Target Start/End: Complemental strand, 20743938 - 20743709
Alignment:
Q  80 aattaaatgtaattctttaatctttttagggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagag 179  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  20743938 aattaaatttaattctttaatccttttaaggaattaaacataattatttttacgatttcattcatatgattttgttgccataaatgaagaaatatgagag 20743839  T
Q  180 atgaataatatatgcaatcgttagttaat-ggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattat 278  Q
    ||||||||||| |||||||| |||||||| |||| |||||||||||||||||          |  |||||||||||||||||||||||||||| ||||||    
T  20743838 atgaataatatctgcaatcggtagttaatgggacctaaaatgatgattcaat-aaaaaaaaatgcaacaacaaaaacgttacaaatgatagaataattat 20743740  T
Q  279 atttgtaattattagtaattaatttcattga 309  Q
    |||||||||||||| ||||||||||||||||    
T  20743739 atttgtaattattattaattaatttcattga 20743709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 20744029 - 20743932
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaa 117  Q
    ||||||||||| ||||||||||| ||||||||||||| |||||  || ||||||||| |||||||||| ||||||||||||| ||||| |||||||||    
T  20744029 ttaactgccgaggaatttcaaacatgaaattaaataaggaaatgcacataaattttccttaattaaatttaattctttaatccttttaaggaattaaa 20743932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 40789230 - 40789136
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    |||||||  ||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||||    
T  40789230 aaaattttagcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattctttaat 40789136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 13580638 - 13580724
Alignment:
Q  39 aaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaatctttttagggaattaaacataatt 124  Q
    |||||||||||||||||| |||||| || ||| |||| | |||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  13580638 aaacctgaaattaaataaagaaatacacgtaagtttttccttaattaaatttaattctttaatccttttaaggaattaaacataatt 13580724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 13590647 - 13590537
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaatctttttagggaattaaac 118  Q
    ||||||||||  ||| || ||||||||||||||||||  ||||| || ||| |||| | |||||||||| ||||||||||||| ||||| ||||||||||    
T  13590647 ttaactgccgcagaacttaaaacctgaaattaaataaataaatacacgtaagtttttccttaattaaatttaattctttaatccttttaaggaattaaac 13590548  T
Q  119 ataattatttt 129  Q
    |||||| ||||    
T  13590547 ataattttttt 13590537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 35672041 - 35671960
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    |||| ||||||  ||||||||| |||||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||||    
T  35672041 ttaagtgccgagtaatttcaaagctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattctttaat 35671960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 41623066 - 41622979
Alignment:
Q  12 ttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacct-aaattttcgttaattaaatgtaattcttta 98  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||  ||||| | || |||||| | |||||||||| ||||||||||    
T  41623066 ttcggcagttaactgtcgaagaatttcaaacctgaaattaaataagaaaatacatctaaaatttcccttaattaaatttaattcttta 41622979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 2169854 - 2169900
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  2169854 tgatttcattcatataattttgttgccataaatgaagaaatatgaga 2169900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 30966667 - 30966573
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaa-attttcgttaattaaatgtaattctttaat 100  Q
    |||| ||||||| ||||||||||| ||| || |||||| |||||||||||  ||||| ||||||  ||||| |||||||||| ||||||||||||    
T  30966667 aaaacttcggcagttaactgccgaggaacttaaaaccttaaattaaataagaaaatacacctaagtttttccttaattaaatttaattctttaat 30966573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 2169737 - 2169806
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttc 76  Q
    |||| ||||||| |||||| |||| ||||||||||||| |||||||||||  ||||| ||||||||||||    
T  2169737 aaaacttcggcagttaactaccgaagaatttcaaacctaaaattaaataagaaaatacacctaaattttc 2169806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 40789112 - 40789066
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||||    
T  40789112 tgatttcattcatataattttgttaccataaatgaagaaatatgaga 40789066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 41622952 - 41622906
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  41622952 tgatttcattcatataattgtgttgtcataaatgaagatatatgaga 41622906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 13590430 - 13590395
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaa 167  Q
    ||||||||||||||||||||||||| ||||||||||    
T  13590430 tgatttcattcatatgattttgttgccataaatgaa 13590395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 30966158 - 30966233
Alignment:
Q  26 gccgatgaatttcaaacctgaaattaaataatgaaatatacctaa-attttcgttaattaaatgtaattctttaat 100  Q
    ||||| ||| || |||||||||||||||||| |||||| ||||||  ||||| |||||||||| ||||||| ||||    
T  30966158 gccgaggaacttaaaacctgaaattaaataaggaaatacacctaagtttttccttaattaaatttaattctataat 30966233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 35671935 - 35671889
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||| ||| ||||| ||| |||||||||||||||||||||    
T  35671935 tgatttcattcgtataattttattgccataaatgaagaaatatgaga 35671889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 37296221 - 37295931
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    |||| |||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||    
T  37296221 ttaattgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatctttttaaggaattaaaca 37296122  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttag---ttaatggacttaa 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||   ||||||||| |||    
T  37296121 taattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagtaattaatggacctaa 37296022  T
Q  217 aatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    ||||||||||||||          |  |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37296021 aatgatgattcaat--aaaaaaaatgcaacaacaaaaacgttagaaatgatagaataattatatttgtaattattagtaattaatttcattga 37295931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 48807409 - 48807109
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatc-tttt 105  Q
    |||| ||||||| |||||||| |||||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||    
T  48807409 aaaacttcggcagttaactgctgatgaatttcaaaccttaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatcctttt 48807310  T
Q  106 tagggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtt 205  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  48807309 taagaaattaaacataattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagtt 48807210  T
Q  206 aatggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttca 305  Q
    ||||||| ||||||||| |||||||          |  |||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  48807209 aatggacctaaaatgataattcaat---aaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttttaattattaataattaatttca 48807113  T
Q  306 ttga 309  Q
    ||||    
T  48807112 ttga 48807109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 37855896 - 37856183
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||| |||||||||| ||||||||||||| ||||| |||||||||||    
T  37855896 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaactttccttaattaaatttaattctttaatcattttaaggaattaaaca 37855995  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    |||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||  |||||||| ||| ||||||    
T  37855996 taattatttttatgattttattcatattattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatccgtagttaatagacctaaaat 37856095  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    ||||||| |||          |  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37856096 gatgatttaat--aaaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcattga 37856183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 2449609 - 2449412
Alignment:
Q  33 aatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaacataattatttttat 132  Q
    |||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||    
T  2449609 aatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatccttttaagaaattaaacataattatttttat 2449510  T
Q  133 gatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatgatgattcaat 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||| ||| |||||||||||||||||    
T  2449509 gatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatctgcaatcagtagttaattgacctaaaatgatgattcaat 2449412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 43175770 - 43176050
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    |||||||||||  ||||||||||||||||||||||||  ||||| |||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||    
T  43175770 ttaactgccgagtaatttcaaacctgaaattaaataagaaaatacacctaaattttccttaattaaatttaattctttaatcattttaaggaattaaaca 43175869  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||| |||||||||||| |||| |    
T  43175870 taattattattatgatttcattcatatgattttgttgccataaataaagatatatgagagatgaataatatctgcaatcggtagttaatggacctaaagt 43175969  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||          |  |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  43175970 gatgattcaat-aaaagtaaatgcaacaacaaaaacgttacaaat--------aattatatttgtaattattagtaattaatttcattga 43176050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 172
Target Start/End: Complemental strand, 18884527 - 18884362
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||||||| ||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||| ||||| ||||||||||||    
T  18884527 aaaacttcggcagttaactgccgaggaatttcaaacctaaaattaaataaggaaatacacctaaattttccttaattaaatttaattatttaatcttttt 18884428  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaat 172  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18884427 aaggaattaaacataattatttttatgatttcattcatatgattttgttgccataaatgaagaaat 18884362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 114 - 309
Target Start/End: Complemental strand, 28235199 - 28235009
Alignment:
Q  114 taaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggact 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||     
T  28235199 taaacataattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagttaatggacc 28235100  T
Q  214 taaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||||||||           |   ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28235099 taaaatgatgattcaataaaaaa-----aatgcaacaaaaacgtttcaaatgatagaataattatatttgtaattattagtaattaatttcattga 28235009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 11565916 - 11566203
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| |||| || ||||||| ||| |||||| ||||||||||||||||||  |||||  ||||||||||| |||||||||| ||||||||||||| ||||    
T  11565916 aaaacttcgacagttaactgtcgaggaattttaaacctgaaattaaataagaaaatacgcctaaattttccttaattaaatttaattctttaatcctttt 11566015  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | ||||||||||| |||||||||              ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||  ||||||    
T  11566016 aaggaattaaacaaaattatttt--------------tatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatctgtagtta 11566101  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    |||| | ||||||||| |||||||          |  ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11566102 atgggcctaaaatgattattcaat-aaaaaaaaatgcaacaataaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcat 11566200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 16473195 - 16473007
Alignment:
Q  115 aaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggactt 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |    
T  16473195 aaacataattatttttatgatttcattcatatgattttgttgccataaataaagaaatatgagagatgaataatatctgcaatcggtagttaatggacct 16473096  T
Q  215 aaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    ||||||||||||||||           |   ||||||||||||| | |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  16473095 aaaatgatgattcaataaaaa------aatgcaacaaaaacgtttctaatgatagaataattatatttgtcattattagtaattaatttcattga 16473007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 43176651 - 43176559
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    |||| ||||||| |||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||    
T  43176651 aaaacttcggcagttaactaccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattcttta 43176559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 48806535 - 48806627
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaa-ttttcgttaattaaatgtaattcttta 98  Q
    |||||||| ||| ||||||||||| |||||||||||||||||||||||||  ||||| ||||||| ||||| |||||||||| ||||||||||    
T  48806535 aaaatttcagcagttaactgccgaggaatttcaaacctgaaattaaataagaaaatacacctaaatttttccttaattaaatttaattcttta 48806627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 2449013 - 2449092
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||    
T  2449013 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattcttta 2449092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 6092778 - 6092686
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    |||| ||||||| ||||||| ||| |||||| |||| ||||||||||||| |||||| | ||||||||| | |||||||||| ||||||||||    
T  6092778 aaaacttcggcagttaactgtcgaagaattttaaacttgaaattaaataaggaaatacatctaaattttcccttaattaaatttaattcttta 6092686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 37856741 - 37856673
Alignment:
Q  33 aatttcaaacctgaaattaaataatgaaatatacctaaatt-ttcgttaattaaatgtaattctttaat 100  Q
    |||||||||||||||||||||||| |||||| ||||||||| | | |||||||||| ||||||||||||    
T  37856741 aatttcaaacctgaaattaaataaggaaatacacctaaattctcccttaattaaatttaattctttaat 37856673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 6092659 - 6092613
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  6092659 tgatttcattcatataattttgttgccataaatgaagaaatatgaga 6092613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 48806654 - 48806700
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  48806654 tgatttcattcatataattttgttgccataaatgaagaaatatgaga 48806700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 7088468 - 7088423
Alignment:
Q  262 aatgatagaacaattatatttgtaattattagtaattaatttcatt 307  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||    
T  7088468 aatgatagaataattatatttgtaattattaataattaatttcatt 7088423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 43176532 - 43176488
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatga 176  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||    
T  43176532 tgatttcattcatataattttgttgccataaatgaagaaatatga 43176488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 27872443 - 27872492
Alignment:
Q  44 tgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaatt 93  Q
    ||||||||||||| |||||| |||||||||||| |||||||||| |||||    
T  27872443 tgaaattaaataaagaaatacacctaaattttccttaattaaatttaatt 27872492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 28235261 - 28235289
Alignment:
Q  122 attatttttatgatttcattcatatgatt 150  Q
    |||||||||||||||||||||||||||||    
T  28235261 attatttttatgatttcattcatatgatt 28235289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 43493027 - 43493059
Alignment:
Q  277 atatttgtaattattagtaattaatttcattga 309  Q
    ||||||||||||||| |||||||||||||||||    
T  43493027 atatttgtaattatttgtaattaatttcattga 43493059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 28138630 - 28138930
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||||||| |||||||||| || |||||||||||  ||||| |||||||||||| |||||||||| ||||||||||||| ||||    
T  28138630 aaaacttcggcagttaactgccgaggaatttcaaatctaaaattaaataagaaaatacacctaaattttccttaattaaatttaattctttaatcctttt 28138729  T
Q  107 agggaattaaacataattatttt-tatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtt 205  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||    
T  28138730 aaggaattaaacataattattttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaattggtagtt 28138829  T
Q  206 aatggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttca 305  Q
    ||||||| ||||||||||||| |||          |  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28138830 aatggacctaaaatgatgatttaat---aaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttca 28138926  T
Q  306 ttga 309  Q
    ||||    
T  28138927 ttga 28138930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 2271760 - 2271462
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| |||||||||||  |||||||||| ||||||||||||| |||||  || ||||||||| |||||||||| |||||||| |||| ||||    
T  2271760 aaaacttcggcagttaactgccgagaaatttcaaacatgaaattaaataaggaaatgcacataaattttccttaattaaatttaattctt-aatcatttt 2271662  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  2271661 aaggaattaaacataattatttttatgatttctttcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagtta 2271562  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    |||||| |||||||||||||||||          |  |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  2271561 atggacctaaaatgatgattcaat---aaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattattattaattaatttcat 2271465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 14002556 - 14002843
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| |||||||||||| |||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||| ||||||||| |    
T  14002556 ttaactgccgaggaatttcaaaccagaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatccttttaaggaattaaata 14002655  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||| || ||||||    
T  14002656 taattatttttatgatttcattcatatga-tttgttgccataaatgaagaaatatgagagatgaataatatctgcaataggtagttaatgaacctaaaat 14002754  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||          |  |||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  14002755 gatgattcaat-aaaaaaaaatgcaacaacaaaaacgttataaatgatagaataattatatttgtaatcattagtaattaatttcattga 14002843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 37322147 - 37321863
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| |||||||||| |||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||| |||| ||||||    
T  37322147 ttaactgccgaggaatttcaaatctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatccttttaaggaaataaaca 37322048  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| |||||||| |||||||||||| ||||||    
T  37322047 taataatttttatgatttcattcatatgattttgttgccataaatgaaaaaatatgagtgatgaataatatctgcaatcggtagttaatggacctaaaat 37321948  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||           |   ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37321947 gatgattcaataaaaaa-----aatgcaacaaaaatgtttcaaatgatagaataattatatttgtaattattagtaattaatttcattga 37321863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 28419457 - 28419681
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaatt-ctttaatctttt 105  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||| |||||||| |||    
T  28419457 aaaacttcggcagttaactgccgatgaatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattaaatttaatttctttaatccttt 28419556  T
Q  106 tagggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtt 205  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||| || ||    
T  28419557 taaggaattaaacataattatttttatgatttcattcatatgattttgttgccataaatgaaaaaatatgatagatgaataatatctgcaatcggtaatt 28419656  T
Q  206 aatggacttaaaatgatgattcaat 230  Q
    ||||||| |||||||||||||||||    
T  28419657 aatggacctaaaatgatgattcaat 28419681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 12252500 - 12252292
Alignment:
Q  22 aactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaacata 121  Q
    ||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||    
T  12252500 aactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatccttttaaggaattaaacata 12252401  T
Q  122 attatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatga 221  Q
     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||||| ||| ||||||||    
T  12252400 gttatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctacaatcggtagttaattgacctaaaatga 12252301  T
Q  222 tgattcaat 230  Q
    |||||||||    
T  12252300 tgattcaat 12252292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 29407910 - 29407591
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||  ||||    
T  29407910 aaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaattctttt 29407811  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgatttt------------------gttgtcataaatgaagaaatatgagagatgaataat 188  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||                  |||| |||||||||||||||||||||||||||||||    
T  29407810 aaggaattaaacataattattttaatgatttcattcatatgattttgttgccatatatgattttgttgccataaatgaagaaatatgagagatgaataat 29407711  T
Q  189 atatgcaatcgttagttaatggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaatt 288  Q
    || |||||||| |||||||||||| |||||||||||||||||             ||||||||||||||||||||||| |||| ||||||||||||||||    
T  29407710 atctgcaatcggtagttaatggacctaaaatgatgattcaatcaaaaaaaag-gcaacaacaaaaacgttacaaatgaaagaataattatatttgtaatt 29407612  T
Q  289 attagtaattaatttcattga 309  Q
    |||||||||||||||||||||    
T  29407611 attagtaattaatttcattga 29407591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 33222666 - 33222850
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| |||||| |||||| ||||    
T  33222666 aaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattcattaatcctttt 33222765  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatata 191  Q
    | ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33222766 aaggaattaaacataattatttttatgatttcaatcatatgattttgttgccataaatgaagaaatatgagagatgaataatata 33222850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 26 - 309
Target Start/End: Complemental strand, 23266233 - 23265965
Alignment:
Q  26 gccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaacataatta 125  Q
    ||||| ||||||||||||||||||||||||| |||||| || ||||||||| |||||||||| ||||||||||||                |||||||||    
T  23266233 gccgaggaatttcaaacctgaaattaaataaggaaatacacttaaattttccttaattaaatttaattctttaatt---------------acataatta 23266149  T
Q  126 tttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatgatgat 225  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |||||||||||  ||||||||||||    
T  23266148 tttttatgatttcatttatatgattttgttgccataaatgaagaaatataagagatgaataatatctgcaatcggtagttaatggatctaaaatgatgat 23266049  T
Q  226 tcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||          |  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23266048 tcaataaaaaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcattga 23265965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 70 - 309
Target Start/End: Original strand, 40156622 - 40156855
Alignment:
Q  70 aattttcgttaattaaatgtaattctttaatctttttagggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaaga 169  Q
    ||||||| |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  40156622 aattttccttaattaaatttaattctttaatccttttaaggaattaaacataattatttttatgatttcattcatatgattttgttgccttaaatgaaga 40156721  T
Q  170 aatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatag 269  Q
    ||||||||||||||||||||| |||||||| ||||||||| || | ||||||||||||||            |   ||||||||||||| ||||||||||    
T  40156722 aatatgagagatgaataatatctgcaatcggtagttaatgaacctgaaatgatgattcaa------aaaaaaaatgcaacaaaaacgtttcaaatgatag 40156815  T
Q  270 aacaattatatttgtaattattagtaattaatttcattga 309  Q
    || |||||||||||||||||||||||||||||||||||||    
T  40156816 aataattatatttgtaattattagtaattaatttcattga 40156855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 111 - 309
Target Start/End: Original strand, 6232762 - 6232956
Alignment:
Q  111 aattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatgg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  6232762 aattaaacataattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagttaatgg 6232861  T
Q  211 acttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    || |||||||||||||||||          | |   |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  6232862 acctaaaatgatgattcaat-aaagaaaaatgt---aacaaaaacgtttcaaatgatagaataattatatttgtaattattagtaattaatttaattga 6232956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 23261022 - 23260959
Alignment:
Q  246 caacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23261022 caacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcattga 23260959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 37294379 - 37294473
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||||    
T  37294379 aaaacttcggcagttaactgccgaagaatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattctttaat 37294473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 37294875 - 37294787
Alignment:
Q  49 ttaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaacataattatttttatgattt 137  Q
    ||||| || |||||| |||||||||||  |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  37294875 ttaaagaaggaaatacacctaaatttttcttaattaaatttaattctttaatccttttaaggaattaaacataattatttttatgattt 37294787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 28139579 - 28139485
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    |||| ||||||| |||||||| || ||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||||    
T  28139579 aaaacttcggcagttaactgctgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattctttaat 28139485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 6232702 - 6232768
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaa 86  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||    
T  6232702 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattaaa 6232768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 1728832 - 1728906
Alignment:
Q  25 tgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaa-ttttcgttaattaaatgtaattcttta 98  Q
    |||||| ||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||||| ||||||||||    
T  1728832 tgccgaagaatttcaaacctgaaattaaataaggaaatacacctaaatttttctttaattaaatttaattcttta 1728906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 29407022 - 29407115
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaa-cctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    |||| ||||||| ||||||||||| |||||||||| |||||||||||||||  ||||| ||||||||||| | |||||||||| ||||||||||    
T  29407022 aaaacttcggcagttaactgccgaagaatttcaaaacctgaaattaaataagtaaatacacctaaattttcccttaattaaatttaattcttta 29407115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 1728933 - 1728979
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  1728933 tgatttcattcatataattttgttgtcataaatgaagaaatatgaga 1728979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 16544544 - 16544503
Alignment:
Q  127 ttttatgatttcattcatatgattttgttgtcataaatgaag 168  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16544544 ttttatgatttcattcatatgattttgttgtcataaatgaag 16544503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 16544426 - 16544490
Alignment:
Q  12 ttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttc 76  Q
    |||||||  |||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||||    
T  16544426 ttcggcagctaactgccgaggaatttcaaacatgaaattaaataaggaaatacacctaaattttc 16544490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 16544640 - 16544540
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| |||| || ||| ||||||| |||||||||| |||||  |||||||  ||||| |||||||||||| |||||||||| |||||| |||||| ||||    
T  16544640 aaaacttcgacagttatctgccgaggaatttcaaatctgaatataaataagaaaatacacctaaattttccttaattaaatttaattccttaatcctttt 16544541  T
Q  107 a 107  Q
    |    
T  16544540 a 16544540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 29407142 - 29407188
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  29407142 tgatttcattcatataattttgttgccataaatgaagaaatatgaga 29407188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 37294501 - 37294545
Alignment:
Q  134 atttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||    
T  37294501 atttcattcatataattttgttgccataaatgaagaaatatgaga 37294545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 14003012 - 14003067
Alignment:
Q  250 aaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttca 305  Q
    |||||| ||| |||||||| || |||||||||| ||||||||||||||||||||||    
T  14003012 aaaaacattataaatgataaaataattatatttataattattagtaattaatttca 14003067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 28139460 - 28139414
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||    
T  28139460 tgattttattcatataattttgttgccataaatgaagaaatatgaga 28139414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 30271124 - 30271217
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaat 100  Q
    |||| ||||| | ||||||| ||| ||| || |||||||||||||||||| |||||| ||  |  ||||| |||||||||| ||||||||||||    
T  30271124 aaaacttcggtagttaactgtcgaagaacttaaaacctgaaattaaataaggaaatacactaagtttttccttaattaaatttaattctttaat 30271217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 37893410 - 37893329
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaa-attttcgttaattaaatgtaattctttaat 100  Q
    |||||| |||| ||| || |||| ||||||||||||| |||||| ||||||  ||||| |||||||||| ||||||||||||    
T  37893410 ttaactaccgaggaacttaaaacatgaaattaaataaggaaatacacctaagtttttccttaattaaatttaattctttaat 37893329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 23260514 - 23260558
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatga 176  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||    
T  23260514 tgatttgattcatataattttgttgccataaatgaagaaatatga 23260558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 33661876 - 33661934
Alignment:
Q  43 ctgaaattaaataatgaaatatacctaa-attttcgttaattaaatgtaattctttaat 100  Q
    |||||||||||||| |||||| ||||||  ||||| |||||||||| ||||||||||||    
T  33661876 ctgaaattaaataaggaaatacacctaagtttttccttaattaaatttaattctttaat 33661934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 30273160 - 30273080
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaat 100  Q
    |||| |||||| ||| || |||||| ||||||||||| |||||| ||  |  ||||| |||||||||| ||||||||||||    
T  30273160 ttaattgccgaggaacttaaaacctaaaattaaataaggaaatacactaagtttttccttaattaaatttaattctttaat 30273080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 37893322 - 37893290
Alignment:
Q  277 atatttgtaattattagtaattaatttcattga 309  Q
    ||||||||||||||| |||||||||||||||||    
T  37893322 atatttgtaattatttgtaattaatttcattga 37893290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 42290333 - 42290620
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||| |||  |||||||||||||||||||||||| |||||| |||||  ||||| |||||||||| ||| ||||||||| ||||| |||||||||||    
T  42290333 ttaactgtcgagaaatttcaaacctgaaattaaataaggaaatacacctatgttttccttaattaaatttaaatctttaatccttttaaggaattaaaca 42290432  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| || ||||| |||||||| ||| ||||||    
T  42290433 taattatttttatgatttcattcatatgattttgttgctataaatgaagaaatatgagagatgaataatatctgtaatcggtagttaatagacctaaaat 42290532  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||          |  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42290533 gatgattcaat--aaaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcattga 42290620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 46 - 309
Target Start/End: Original strand, 7943031 - 7943292
Alignment:
Q  46 aaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaacataattatttttatgatttcattcata 145  Q
    ||||||||||| |||||| |||||||||||| |||||||||| ||||||| ||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  7943031 aaattaaataaggaaatacacctaaattttccttaattaaatttaattctgtaatccttttaaagaattaaacataattatttttatgatttcattcata 7943130  T
Q  146 tgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatgatgattcaatnnnnnnnnnntataa 245  Q
    ||||||||||| |||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||          |  ||    
T  7943131 tgattttgttgccataaatgaaaaaatatgagagatgaataatatctgcaatcggtagttaatggacttaaaatgatgattcaat--aaaaaaaatgcaa 7943228  T
Q  246 caacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7943229 caacaacaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcattga 7943292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 12628158 - 12627864
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||| ||| ||||||||||||||||||||||||| |||||| ||||||| |||| |||||||||| ||||||||||||| | ||    
T  12628158 aaaacttcggcagttaactgtcgaggaatttcaaacctgaaattaaataaggaaatacacctaaaatttccttaattaaatttaattctttaatcctgtt 12628059  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    |  |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||||    
T  12628058 aaagaattaaacataattatttttatgatttcatttatatgattttgttgccataaatgaagaaatatgagagatgaataatatctgtaatcggtagtta 12627959  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatt 302  Q
    |||||| |||||| ||||||||||          || ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  12627958 atggacctaaaataatgattcaat-aaaaaaaaatacaacaacaaaaacgttacaaataatagaataattatatctgtaattattagtaattaatt 12627864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 21 - 309
Target Start/End: Original strand, 21699939 - 21700226
Alignment:
Q  21 taactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaa-tgtaattctttaatctttttagggaattaaaca 119  Q
    |||||||||| |||||||||||||||||||||||||  ||||| |||||||||||| ||||||||| | ||||||||||||| | ||| | |||||||||    
T  21699939 taactgccgaggaatttcaaacctgaaattaaataagaaaatacacctaaattttccttaattaaaatttaattctttaatcctcttaagaaattaaaca 21700038  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||| || ||||||||| ||||||    
T  21700039 taattatttttatgatttcattcatatgattttgttgccataaatgaaaaaatatgatagatgaataatatgtgcaatcggtaattaatggacctaaaat 21700138  T
Q  220 gatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||          |  |||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||    
T  21700139 gatgattcaat--aaaaaaaatgcaacaacaaaaacgttagaaatgatataataattatatttgtaattattagtaattaatttcattga 21700226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 5330037 - 5329736
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatc-tttt 105  Q
    |||| |||| || ||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||  |||||||||| ||||||||||||| ||||    
T  5330037 aaaacttcgacagttaactgtcgatgaatttcaaacctaaaattaaataaggaaatacacctaaattttttttaattaaatttaattctttaatcctttt 5329938  T
Q  106 tagggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtt 205  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| |||||||||| |||||||||||||| |||||||| |||||    
T  5329937 taatgaattaaacataattatttttatgatttcattcatatgattttcttaccataaataaagaaatatgggagatgaataatatgtgcaatcggtagtt 5329838  T
Q  206 aatggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttca 305  Q
    ||||| | ||||||||||||||||           |  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5329837 aatggtc-taaaatgatgattcaa-gaaaacaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttca 5329740  T
Q  306 ttga 309  Q
    ||||    
T  5329739 ttga 5329736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 50 - 309
Target Start/End: Original strand, 51461149 - 51461407
Alignment:
Q  50 taaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaacataattatttttatgatttcattcatatgat 149  Q
    |||||||  ||||| |||||||||||  |||||||||| ||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  51461149 taaataagaaaatacacctaaatttttcttaattaaatttaattctttaatccttttaaagaattaaacataattatttttatgatttcattcatatgat 51461248  T
Q  150 tttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatgatgattcaatnnnnnnnnnntataacaac 249  Q
    |||||||  |||||||||||||||| |||||| |||||||| |||||||| ||||||   ||| |||||||||||||||||          |  ||||||    
T  51461249 tttgttgctataaatgaagaaatataagagataaataatatctgcaatcggtagttagatgacctaaaatgatgattcaat-aaaaaacaatgcaacaac 51461347  T
Q  250 aaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  51461348 aaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcattga 51461407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 18609918 - 18609703
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||  |||||||||| ||||||||||||||        
T  18609918 aaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaatttttcttaattaaatttaattctttaatct---- 18609823  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||  ||||||| || |||    
T  18609822 aaggaattacacataattatttttatgatttcattcatatgattttgttgccataaatgaaaaaatatgatagatgaataatatccgcaatcggtaatta 18609723  T
Q  207 atggacttaaaatgatgatt 226  Q
    |||||| ||| |||||||||    
T  18609722 atggacctaatatgatgatt 18609703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 13761067 - 13760967
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| |||| || ||||||||||| ||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||    
T  13761067 aaaacttcgacagttaactgccgacgaatttcaaaccttaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatcatttt 13760968  T
Q  107 a 107  Q
    |    
T  13760967 a 13760967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 12627276 - 12627357
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||||||||||    
T  12627276 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattctttaat 12627357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 13760958 - 13760897
Alignment:
Q  161 aaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatgat 222  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||    
T  13760958 aaatgaagaaatatgagagatgaataatatctgcaatcggtagttaatggacctaaaatgat 13760897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 41909684 - 41909623
Alignment:
Q  169 aaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatgatgattcaat 230  Q
    |||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||    
T  41909684 aaatatgagagatgaataatatctgcaatcggtagttaatggacctaaaatgatgattcaat 41909623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 21268789 - 21268697
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    |||| ||||||| |||||||| || ||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||| ||||    
T  21268789 aaaacttcggcagttaactgctgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttcctttaattaaatttaattattta 21268697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 41908992 - 41909086
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    |||| ||||||| |||||||  || |||||| |||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||| ||||||    
T  41908992 aaaacttcggcagttaactgttgaagaattttaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaattatttaat 41909086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 41909111 - 41909157
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  41909111 tgatttcattcatataattttgttgtcataaatgaagaaatatgaga 41909157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 5329160 - 5329241
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattctttaat 100  Q
    ||||||||||| ||||||| || |||||||||||||| |||||| ||||||||||| | ||||||||||  |||||||||||    
T  5329160 ttaactgccgaggaatttcgaatctgaaattaaataaggaaatacacctaaattttcccttaattaaattaaattctttaat 5329241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 12627382 - 12627428
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  12627382 tgatttcattcatataattttgttgccataaatgaagaaatatgaga 12627428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 5329266 - 5329312
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  5329266 tgatttcattcatataattttgttgccataaataaagaaatatgaga 5329312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 15695844 - 15695937
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaa-attttcgttaattaaatgtaattctttaa 99  Q
    |||| ||||||| |||||||||||  |||||| |  |||||||||||||| |||||| | ||||  ||||| |||||||||| |||||||||||    
T  15695844 aaaacttcggcagttaactgccgagaaatttcgagtctgaaattaaataaggaaatacatctaagtttttccttaattaaatttaattctttaa 15695937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 41909728 - 41909680
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaata 55  Q
    |||||||||||| ||||||||||| |||||||||| ||||| |||||||    
T  41909728 aaaatttcggcagttaactgccgaggaatttcaaatctgaacttaaata 41909680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 21268667 - 21268624
Alignment:
Q  135 tttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    |||||||||||| ||||||||| |||||||||| ||||||||||    
T  21268667 tttcattcatataattttgttgccataaatgaaaaaatatgaga 21268624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 48455527 - 48455574
Alignment:
Q  16 gcaattaactgccgatgaatttcaaacctgaaattaaataatgaaata 63  Q
    ||||||||||| |||  |||||||||||||||||||||||| ||||||    
T  48455527 gcaattaactgtcgagaaatttcaaacctgaaattaaataaggaaata 48455574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 12627675 - 12627630
Alignment:
Q  244 aacaacaaaaacgttacaaatgatagaacaattatatttgtaatta 289  Q
    |||||||||||  ||| ||||||||||| |||||||||||||||||    
T  12627675 aacaacaaaaatattataaatgatagaataattatatttgtaatta 12627630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 46 - 309
Target Start/End: Original strand, 8790 - 9052
Alignment:
Q  46 aaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaacataattatttttatgatttcattcata 145  Q
    ||||| ||||| |||||| ||||||| |||| |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  8790 aaatttaataaggaaatacacctaaaatttccttaattaaatttaattctttaatccttttaaggaattaaacataattatttttatgatttcattcata 8889  T
Q  146 tgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaatgatgattcaatnnnnnnnnnntataa 245  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| |||          |  ||    
T  8890 tgattttgttgccataaatgaagaaatatgagagatgaataatatctgcaatcggtagttaatggacctaaaatgatgatttaat-aaaaaaaaatgcaa 8988  T
Q  246 caacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8989 aaacaaaaacgttacaaatgatagaataattatatttgtaattattagtaattaatttcattga 9052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 11159441 - 11159149
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||| | |||||| |||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||    
T  11159441 ttaactgccaaggaattttaaacctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatccttttaaggaattaaaca 11159342  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaat-ggacttaaaa 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||| ||||||||    | |||||    
T  11159341 taattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctactatcggtagttaataattcctaaaa 11159242  T
Q  219 tgatgattcaatnnnnnnnnnntat--aacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    ||||||||||||           ||  |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11159241 tgatgattcaataaaaaaaaaaaatgcaacaacaaaaacgttacaaatgatagaataattatatttgaaattattagtaattaatttcattga 11159149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 35096688 - 35096963
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||||||| ||||||||||||| |||||||||||  ||||| |||||||||||| |||||||||| ||||||||||||| ||||    
T  35096688 aaaacttcggcagttaactgccgaagaatttcaaacctaaaattaaataagaaaatacacctaaattttccttaattaaatttaattctttaatcctttt 35096787  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  35096788 aaggaattaaacataattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagaggaataatatctgcaatcggtagtta 35096887  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttg 283  Q
    |||||| ||||||||||||||||           |  ||||| |||||||||||||||||||||| |||||||||||    
T  35096888 atggacctaaaatgatgattcaa-caaaaaaaaatgcaacaaaaaaaacgttacaaatgatagaataattatatttg 35096963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 15546412 - 15546208
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||    
T  15546412 aaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaattttccttaattaaatttaattctttaatcctttt 15546313  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |||||||| | ||||    
T  15546312 aaggaattaaacataattatttttatgatttcattcatat-attttgttgccataaatgaagaaatatgagagatgaaaaatatctgcaatcggtcgtta 15546214  T
Q  207 atggac 212  Q
    ||||||    
T  15546213 atggac 15546208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 117905 - 117713
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||| | |||||||||| |||||||||||||| || ||| |||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||    
T  117905 ttaactgccaaggaatttcaaaactgaaattaaataaggagatacacctaaattttccttaattaaatttaattctttaatccttttaaggaattaaaca 117806  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggac 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |  ||||| ||||||||||||    
T  117805 taattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatctataatcggtagttaatggac 117713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 17338787 - 17338502
Alignment:
Q  7 aaaatttcggcaattaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatcttttt 106  Q
    |||| |||||||||||||||||||  ||||| ||| ||||||||||||||  ||||| |||||||||||| |||||||||| ||||||||              
T  17338787 aaaacttcggcaattaactgccgagaaattttaaatctgaaattaaataagaaaatacacctaaattttccttaattaaatttaattctt---------- 17338698  T
Q  107 agggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagtta 206  Q
       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||| | ||||||    
T  17338697 ---gaattaaacataattatttttatgatttcattcatatgattttgttgccataaatgtggaaatatgagagatgaataatatctgcaataggtagtta 17338601  T
Q  207 atggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcat 306  Q
    |||||| || |||||| |||||||           |   |||||||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  17338600 atggacctataatgatcattcaataaaaaaa----aatgcaacaaaaacctttcaaatgatagaataattatatttgtaattattagtaattaatatcat 17338505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 114 - 309
Target Start/End: Original strand, 26350387 - 26350576
Alignment:
Q  114 taaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggact 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||||||||      
T  26350387 taaacataattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatatct-caatcggtagttaatggatc 26350485  T
Q  214 taaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    |||||||||||||||||          |     |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26350486 taaaatgatgattcaataaaaaaaatgt-----aacaaaaacgtttcaaatgatagaataattatatttgtaattattagtaattaatttcattga 26350576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 32396563 - 32396374
Alignment:
Q  109 ggaattaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaat 208  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||      ||| ||||||||    
T  32396563 ggaattaaacattattatttttatgatttcattcatatgattttgttgccataaatgaagaaatatgagagatgaataatat-----ctcggtagttaat 32396469  T
Q  209 ggacttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattg 308  Q
    |||| |||||||||||||| ||           |   ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  32396468 ggacctaaaatgatgattcgataaaaa------aatgcaacaaaaacgtttcaaatgatagaataattatatttgtaattattagtaattaattttattg 32396375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 11157799 - 11157878
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaatttt-cgttaattaaatgtaattcttta 98  Q
    ||||||||||| ||||||||||||||||||||||||| |||||  ||||||||||| | |||||||||| ||||||||||    
T  11157799 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatgcacctaaattttcccttaattaaatttaattcttta 11157878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 11157905 - 11157951
Alignment:
Q  132 tgatttcattcatatgattttgttgtcataaatgaagaaatatgaga 178  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  11157905 tgatttcattcatataattttgttgccataaatgaagaaatatgaga 11157951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 150
Target Start/End: Complemental strand, 26350325 - 26350297
Alignment:
Q  122 attatttttatgatttcattcatatgatt 150  Q
    |||||||||||||||||||||||||||||    
T  26350325 attatttttatgatttcattcatatgatt 26350297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 54628 - 54838
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaaattttcgttaattaaatgtaattctttaatctttttagggaattaaaca 119  Q
    ||||||||||| |||||| |||  ||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||    
T  54628 ttaactgccgaggaattttaaatatgaaattaaataaggaaatacacctaaattttctttaattaaatttaattctttaatcattttaaggaattaaaca 54727  T
Q  120 taattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatggacttaaaat 219  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  54728 taattatttttatgatttcattcatataattttgttgccataaatgaagaaatatgagagatgaataatatatgcaatcggtagttaatagacctaaaat 54827  T
Q  220 gatgattcaat 230  Q
    |||||||||||    
T  54828 gatgattcaat 54838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 112 - 309
Target Start/End: Original strand, 127647 - 127842
Alignment:
Q  112 attaaacataattatttttatgatttcattcatatgattttgttgtcataaatgaagaaatatgagagatgaataatatatgcaatcgttagttaatgga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||| || |||| ||||||||||||||||| |||||||| |||||||||||    
T  127647 attaaacataattatttttatgatttcattcatatgattttgttgccttaaattaataaatttgagagatgaataatatctgcaatcggtagttaatgga 127746  T
Q  212 cttaaaatgatgattcaatnnnnnnnnnntataacaacaaaaacgttacaaatgatagaacaattatatttgtaattattagtaattaatttcattga 309  Q
    | |||||||||||||||||          |  ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  127747 cctaaaatgatgattcaat--aaaaaaaatgcaacaacaaaaatgttacaaatgatagaataattatatttgtaattattattaattaatttcattga 127842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 1649 - 1568
Alignment:
Q  20 ttaactgccgatgaatttcaaacctgaaattaaataatgaaatatacctaa-attttcgttaattaaatgtaattctttaat 100  Q
    |||||||||||  |||||||| |||||||||||||||  ||||| | ||||  ||||| |||||||||| |||||| |||||    
T  1649 ttaactgccgagaaatttcaagcctgaaattaaataagaaaatacatctaagtttttccttaattaaatttaattccttaat 1568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 356 - 324
Alignment:
Q  277 atatttgtaattattagtaattaatttcattga 309  Q
    ||||||||||||||| |||||||||||||||||    
T  356 atatttgtaattatttgtaattaatttcattga 324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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