View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9219_low_35 (Length: 295)
Name: NF9219_low_35
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 5445226 - 5444962
Alignment:
| Q |
17 |
catctagtagttgtttattagctgtgactcatcaactatagtttctatttctaaacaactagagtggacttagttagccatattaattgctcccatatag |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5445226 |
catctagtagttgtttattagctgtgattcatcagctatagtttctatttctaaacaactagagtggacttagttagccatattaattgctcccatatag |
5445127 |
T |
|
| Q |
117 |
tatgattttatgacctgcaataccattttcttgaccataatacaaatccagctcatttatctttcatagttcatcacaaaaattcctttatgagcttaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5445126 |
tatgattttatgacctgcaataccattttcttgaccataatacaaatccagctcatttatctttcatagttcatcacaaaaattcctttatgagcttaat |
5445027 |
T |
|
| Q |
217 |
taatcaattaaattaacatacctgcagcatgttcattgccggtaacctaattaatttgaaaatat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5445026 |
taatcaattaaattaacatacctgcagcatgttcattgccggtaacctaattaatttgaaaatat |
5444962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University