View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9203_low_2 (Length: 641)
Name: NF9203_low_2
Description: NF9203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9203_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 8358212 - 8358588
Alignment:
| Q |
18 |
atgagtaggatggtgaagaggttgaatgatgaggtggaacatagaaaaatggttgctcaagtttgtgtgaagaatgttggtagtaaatgtgaaatattga |
117 |
Q |
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| T |
8358212 |
atgagtaggatggtgaagaggttgaatgatgaggtggaacatagaaaaatggttgctcaagtttgtgtgaagaatgttggtagtaaatgtgaaatattga |
8358311 |
T |
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| Q |
118 |
agaggtttatgagtgaatttagtgatcaagagtctagctttttggatgagttggaagaacttgaagaacatgtttacttgtgctttctcaccgttaacaa |
217 |
Q |
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| T |
8358312 |
agaggtttatgagtgaatttagtgatcaagagtcaagatttttggatgagttggaagaacttgaagaacatgtttacttgtgctttctcaccgttaacaa |
8358411 |
T |
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| Q |
218 |
atctaggagacttgttctgcaacaaattacagagagatcacaacatta-----attatattatattaatttagaaaagaaaatatgagagacatatttta |
312 |
Q |
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| T |
8358412 |
atctaggagacttgttctgcaacaaattacagagagatcacaacattaattatattatattatattaatttagaaaagaaaatatgagagacatatttta |
8358511 |
T |
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| Q |
313 |
aactcaattatattgcttacgagtaatattatagaggaaataaataattcacgggcgtgattttcacacgttgcttg |
389 |
Q |
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| T |
8358512 |
aactcaattatattgcttacaagtaatattatagaggaaataaataattcacggacgtgattttcacacgttgcttg |
8358588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 460 - 629
Target Start/End: Original strand, 8358669 - 8358838
Alignment:
| Q |
460 |
tctgtaaattcactgattcaccttatctctattattatctgcttgtaatgctttgatagtagatgaataaatcaattttaggtttttgaaacatgtacaa |
559 |
Q |
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| T |
8358669 |
tctgtaaattcactcattcaccttatctctattattatctgcttgtaatgctttgatagtagatgaataaatcaattttaggtttttgaaacatgtacaa |
8358768 |
T |
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| Q |
560 |
gaaaataacttgaaacaattttaggtgcagtgaatatcattttcttttctattatcaccaattctctgct |
629 |
Q |
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| T |
8358769 |
gaaaataacttgaaacaattttagatgcagtgaatatcattttcttttctattatcaccaattctatgct |
8358838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 4e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 28593361 - 28593124
Alignment:
| Q |
18 |
atgagtaggatggtgaagaggttgaatgatgaggtggaacatagaaaaatggttgctcaagtttgtgtgaagaat---gttggtagtaaatgtgaaatat |
114 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| | ||||||||||||||| |||||||||||||||||||||| |
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| T |
28593361 |
atgagtaggatggtgaagaggttgaatgatgaagtggagcataggaaaatttttgctgatgtttgtgtgaagaataatgttggtagtaaatgtgaaatat |
28593262 |
T |
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| Q |
115 |
tgaagaggtttatgagtgaatttagtgatcaagagtctagctttttggatgagttggaagaacttgaagaacatgtttacttgtgctttctcaccgttaa |
214 |
Q |
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|||||||| |||||||||||| | | |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| | || |
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| T |
28593261 |
tgaagagggttatgagtgaatatcgagatcaagagtctagctttttggatcagttggaagagcttgaagaacatgtttacttgtgctttcttaccatcaa |
28593162 |
T |
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| Q |
215 |
caaatctaggagacttgttctgcaacaaattacagaga |
252 |
Q |
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| T |
28593161 |
taaatctaggagacttgttatgcaacaaattacagaga |
28593124 |
T |
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