View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_low_15 (Length: 524)

Name: NF9183_low_15
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_low_15
NF9183_low_15
[»] chr1 (2 HSPs)
chr1 (78-506)||(7633204-7633632)
chr1 (5-88)||(7633109-7633192)
[»] chr8 (1 HSPs)
chr8 (274-337)||(2998891-2998954)
[»] chr6 (3 HSPs)
chr6 (274-337)||(33462028-33462091)
chr6 (274-337)||(34826185-34826248)
chr6 (280-324)||(25419069-25419113)
[»] chr3 (1 HSPs)
chr3 (274-337)||(37194465-37194528)
[»] chr4 (1 HSPs)
chr4 (274-326)||(46142834-46142886)


Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 78 - 506
Target Start/End: Original strand, 7633204 - 7633632
Alignment:
Q  78 tatatatatatcacttattgtatgtttggatcactctttatacaccttagaacannnnnnnacacgtaacgtaactcgcaactttaaattaactttctgc 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||| ||||||||||||||||||||||    
T  7633204 tatatatatatcacttattgtatgtttggatcactctttatacaccttagaacatttttttacacgtaatgtaactcacaactttaaattaactttctgc 7633303  T
Q  178 gtaaataatcttaatggtagttagtgtagttactttctacgcaagtaatcttaatgaaaggagannnnnnnnnngttcttcagttttatgtcttttaata 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||| ||||    
T  7633304 gtaaataatcttaatggtagttagtgtagttactttctacgcaagtaatcttaatgaaaggagattttttttttgttcttcagttttatgtctttcaata 7633403  T
Q  278 ttctcccacaagctggagcatgatagatgtttatcatgcccaacttggacacaaaagaatgaaacttgggtgatgctagctgtttagtgaggaaacgtgc 377  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7633404 ttctcgcacaagctggagcatgatagatgtttatcatgcccaacttggacacaaaagaatgaaacttgggtgatgctagctgtttagtgaggaaacgtgc 7633503  T
Q  378 aattttctcgtttgttgagattggtagtaatcaaagtattcttttttgaatatttatgctaaccaagtgacaatcgatttttaaatgctcaattctttca 477  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  7633504 aattttctcatttgttgagattggtagtaatcaaagtattcttttttgaatatttatgctaaccaagcgacaatcgatttttaaatgctcagttctttca 7633603  T
Q  478 tggaacactgaatttgaagctatatgtat 506  Q
    |||||||||||||||||||||||||||||    
T  7633604 tggaacactgaatttgaagctatatgtat 7633632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 7633109 - 7633192
Alignment:
Q  5 cctcccgtgacgaaatatgagagaaaatgacttgtgtgnnnnnnntcttatgtggtactcacttatctcaccctatatatatat 88  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||| ||||||||||||||||||||||||||    
T  7633109 cctcccgtgacgaaatatgagagaaaatgacttgtgtggaaaaaatcttatgtggtagtcacttatctcaccctatatatatat 7633192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 2998954 - 2998891
Alignment:
Q  274 aatattctcccacaagctggagcatgatagatgtttatcatgcccaacttggacacaaaagaat 337  Q
    ||||| ||||||||||||||||||||||| || |||||||| || | |||||| ||||||||||    
T  2998954 aatatcctcccacaagctggagcatgataaatatttatcattccaagcttggatacaaaagaat 2998891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 33462091 - 33462028
Alignment:
Q  274 aatattctcccacaagctggagcatgatagatgtttatcatgcccaacttggacacaaaagaat 337  Q
    ||||| ||||||||||||||||||||||| || |||||||| || | |||||| ||||||||||    
T  33462091 aatatcctcccacaagctggagcatgataaatatttatcattccaagcttggatacaaaagaat 33462028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 34826248 - 34826185
Alignment:
Q  274 aatattctcccacaagctggagcatgatagatgtttatcatgcccaacttggacacaaaagaat 337  Q
    ||||| ||||||||||||||||||||||| || |||||||| || | |||||| ||||||||||    
T  34826248 aatatcctcccacaagctggagcatgataaatatttatcattccaagcttggatacaaaagaat 34826185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 25419069 - 25419113
Alignment:
Q  280 ctcccacaagctggagcatgatagatgtttatcatgcccaacttg 324  Q
    |||||||||||| ||||||| || ||||||||||| |||||||||    
T  25419069 ctcccacaagctagagcatggtatatgtttatcattcccaacttg 25419113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 37194528 - 37194465
Alignment:
Q  274 aatattctcccacaagctggagcatgatagatgtttatcatgcccaacttggacacaaaagaat 337  Q
    ||||| ||||||||||||||||||||||| || |||||||| || | |||||| ||||||||||    
T  37194528 aatatcctcccacaagctggagcatgataaatatttatcattccaagcttggatacaaaagaat 37194465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 46142886 - 46142834
Alignment:
Q  274 aatattctcccacaagctggagcatgatagatgtttatcatgcccaacttgga 326  Q
    ||||| |||||||||| |||||||||||| ||||| |||||||| | ||||||    
T  46142886 aatatcctcccacaagttggagcatgataaatgttgatcatgccaagcttgga 46142834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University