View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8393_low_2 (Length: 494)
Name: NF8393_low_2
Description: NF8393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8393_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 46809257 - 46808823
Alignment:
| Q |
18 |
taaactatttatatatgtggtgcatgtgaggaaaagtttagcattatatatattacctgaaatttaccaggcctattaacaggtatgacgagatctacta |
117 |
Q |
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| T |
46809257 |
taaactatttatatatgtggtgcatgtgaggaaaagtttagcattatatatattacctgaaatttaccaggcctattaacaggtatgacgagatctacta |
46809158 |
T |
|
| Q |
118 |
ccctaagatcctcatcattgtcttggttaactagataagcagtcgagcccgcagggagtttaatagtatcaccttgctcaaggttaaacgagtttctatt |
217 |
Q |
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| T |
46809157 |
ccctaagatcctcatcattgtcttggttaactagataagcagtcgagcccgcagggagtttaatagtatcaccttgctcaaggttaaacgagtttctatt |
46809058 |
T |
|
| Q |
218 |
gttggaatttaacacagtaagtatggctttccctgcatacacatataataacaaacaaattagttatgtatgtaaaatgaagaagagaaactactattaa |
317 |
Q |
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| T |
46809057 |
gttggaatttaacacagtaagtatggctttccctgcatacacatataataacaaacaaattagttatgtatgtaaaatgaagaagaaaaactaccattaa |
46808958 |
T |
|
| Q |
318 |
tggatgttgaactcaaattcttccaacaatgcaagatgttatagtaatgtaacataataaaataattacgtaccactaaggactacaaggatgaagtcgg |
417 |
Q |
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| T |
46808957 |
tggatgttgaactcaaattcttccaacaatgcaagatgttatagtaatataacataataaaataattacgcaccactgaggactacaaggataaagtcgg |
46808858 |
T |
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| Q |
418 |
catcagtgtggtgggggaggaagatggtgtggggt |
452 |
Q |
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| T |
46808857 |
catcagtgtggtgggggaggaagatggtgtggggt |
46808823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 67 - 254
Target Start/End: Complemental strand, 30298170 - 30297983
Alignment:
| Q |
67 |
atattacctgaaatttaccaggcctattaacaggtatgacgagatctactaccctaagatcctcatcattgtcttggttaactagataagcagtcgagcc |
166 |
Q |
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| T |
30298170 |
atattacctgaaatttaccgggtctgttaacggggatggcaagatctaatactctaagatcctcattgtcatctcggttagccaaataagcaatgctgcc |
30298071 |
T |
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| Q |
167 |
cgcagggagtttaatagtatcaccttgctcaaggttaaacgagtttctattgttggaatttaacacagtaagtatggctttccctgca |
254 |
Q |
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| T |
30298070 |
ggcagggagtttgatagtatcaccgcgttcaaggttgaaggagtttctgttgtctgggttcaacacggtgagtatggctttccctgca |
30297983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 30285600 - 30285514
Alignment:
| Q |
168 |
gcagggagtttaatagtatcaccttgctcaaggttaaacgagtttctattgttggaatttaacacagtaagtatggctttccctgca |
254 |
Q |
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| T |
30285600 |
gcagggagtttgatggtatcaccacgctcaaggttgaaggagtttctattgttggggttcaacaccgtcagtatggctttccctgca |
30285514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 254
Target Start/End: Complemental strand, 30303354 - 30303167
Alignment:
| Q |
67 |
atattacctgaaatttaccaggcctattaacaggtatgacgagatctactaccctaagatcctcatcattgtcttggttaactagataagcagtcgagcc |
166 |
Q |
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||||||||||||||| ||| || || |||||||| ||| | ||||||| ||| ||||| |||| | | ||| ||||| | | ||||||| | ||| |
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| T |
30303354 |
atattacctgaaattgaccgggtctgttaacagggatggcaagatctaatactctaaggtcctggttgtcatctcggttagccaaataagcaatgctgcc |
30303255 |
T |
|
| Q |
167 |
cgcagggagtttaatagtatcaccttgctcaaggttaaacgagtttctattgttggaatttaacacagtaagtatggctttccctgca |
254 |
Q |
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| T |
30303254 |
ggcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctattgtttgggttcaacaccgtgagtatggctttccctgca |
30303167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 254
Target Start/End: Complemental strand, 30314223 - 30314036
Alignment:
| Q |
67 |
atattacctgaaatttaccaggcctattaacaggtatgacgagatctactaccctaagatcctcatcattgtcttggttaactagataagcagtcgagcc |
166 |
Q |
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||||||||||||||| ||| || || |||||||| ||| | ||||||| ||| ||||| |||| | | ||| ||||| | | ||||||| | ||| |
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| T |
30314223 |
atattacctgaaattgaccgggtctgttaacagggatggcaagatctaatactctaaggtcctggttgtcatctcggttagccaaataagcaatgctgcc |
30314124 |
T |
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| Q |
167 |
cgcagggagtttaatagtatcaccttgctcaaggttaaacgagtttctattgttggaatttaacacagtaagtatggctttccctgca |
254 |
Q |
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| T |
30314123 |
agcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctattgtttgggttcaacaccgtgagtatggctttccctgca |
30314036 |
T |
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