View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8379_high_2 (Length: 813)
Name: NF8379_high_2
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 553; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 78 - 739
Target Start/End: Original strand, 41854344 - 41855006
Alignment:
| Q |
78 |
agaagataataataacaagagtgaatgagtcatctactatttcagggggaaaattggaaatttactcgaaaaagctaaagctaatatcaggatcaggact |
177 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41854344 |
agaagataataataaaaagagtgaatgagtcatctactatttcagggggaaaattggaaatttactcgaaaaag------ctaatatcaggatcaggact |
41854437 |
T |
|
| Q |
178 |
atattatattaattgaaactcacttttgtccaactgcgaaagcaaccaaacaggacatattacgagtgaagaagtagcgtccacctggtttgagattcca |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41854438 |
atattatattaattgaaactcacttttgtccaactgcgaaagcaaccaaacaggacatattacgagtgaagaagtagcgtccacctggtttgagattcca |
41854537 |
T |
|
| Q |
278 |
ttcttcattctcattaagaagatgaaaaccagctgcgatcaattgtcttttagcttcagctacacacgaaatgaaaaaaggttagtttaggcaaaatgga |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41854538 |
ttcttcattctcattaagaagatgaaaaccagctgcgatcaattgtcgtttagcttcagctacacacgaaatg-aaaaaggttagtttaggcaaaatgga |
41854636 |
T |
|
| Q |
378 |
agaataataaataagaatggaatgaaggtactgtacctgtggcgtggaaatgagtccaagattcgttgaggtaatcgagaagatcgttaacaatggaagc |
477 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41854637 |
agaat----aataagaatggaatgaaggtactgtacctgtggcgtggaaatgagtccaagattcgttaaggtaatcgagaagatcgttaacaatggaagc |
41854732 |
T |
|
| Q |
478 |
ggattgggattttgaagatgtggaattggtggagcagaagacacgtcgt------------gatgaatttgggagattgcggtagcgaagaaatggtgac |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41854733 |
ggattgggattttgaagatgtggaattggtggagcagaagacacgtcgtggaatgaagggcgatgaatttgggagatttcggtagcgaagaaatggtgac |
41854832 |
T |
|
| Q |
566 |
gatggtttgagattgagtttgagtgatggagatgaagaatgcagaagaagaatgtgcggtcgagttattgttgatgccatgatgtttcaaactcagtccc |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41854833 |
gatggtttgagattgagtttgagtgatggagatgaagagtgcagaagtagaatgtgcggtcgagttattgttgatgccatgatgtttcaaacttagtccc |
41854932 |
T |
|
| Q |
666 |
aacactcataacaaacacccaacctctgtcaactagtattggatcaaggtggatatcgttagaatcgttgatga |
739 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41854933 |
aacactcataacaaacacccaacctctgtcaactagtattgcatcaaggtggatatcgttagaatcgttgatga |
41855006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 41854249 - 41854309
Alignment:
| Q |
18 |
acaaggactatccgtatgtgctgctatcgcataaaaaccattacccacatcgtaccttcaa |
78 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41854249 |
acaaggactatcagtatgtgctgctatcgcataaaaaccattacccacatcataccttcaa |
41854309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 748 - 808
Target Start/End: Original strand, 41855055 - 41855115
Alignment:
| Q |
748 |
ggtgacccaaaaaataagtttaatgagtaaataacaagtcattatgtgatgtccatctcat |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
41855055 |
ggtgacccaaaaaataagtttaatgagtaaataacaagtcattatgtgatatccgtctcat |
41855115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University