View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8369_high_2 (Length: 1008)

Name: NF8369_high_2
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8369_high_2
NF8369_high_2
[»] chr1 (3 HSPs)
chr1 (19-997)||(28369679-28370670)
chr1 (712-867)||(1911311-1911473)
chr1 (770-827)||(33689561-33689618)
[»] chr4 (5 HSPs)
chr4 (758-838)||(17692672-17692752)
chr4 (744-834)||(19189848-19189938)
chr4 (743-859)||(20797902-20798017)
chr4 (649-683)||(20798043-20798077)
chr4 (802-863)||(53787178-53787239)
[»] chr3 (2 HSPs)
chr3 (744-837)||(44864498-44864591)
chr3 (640-682)||(44864619-44864661)
[»] chr5 (2 HSPs)
chr5 (758-818)||(6394875-6394935)
chr5 (767-838)||(33578143-33578214)
[»] chr2 (5 HSPs)
chr2 (645-682)||(797559-797596)
chr2 (640-681)||(35716906-35716947)
chr2 (762-838)||(35716218-35716293)
chr2 (771-838)||(797457-797524)
chr2 (747-784)||(2828769-2828806)
[»] chr8 (3 HSPs)
chr8 (758-817)||(26029584-26029643)
chr8 (640-682)||(16623060-16623102)
chr8 (747-784)||(21154209-21154246)
[»] chr6 (1 HSPs)
chr6 (645-679)||(17340211-17340245)
[»] scaffold0768 (1 HSPs)
scaffold0768 (758-838)||(2862-2942)


Alignment Details
Target: chr1 (Bit Score: 781; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 19 - 997
Target Start/End: Complemental strand, 28370670 - 28369679
Alignment:
Q  19 acagtcaccgagtagaagaagaagaa---tcaaattgaaagggaatgtttggagtgaaaagaaaatcaactttagtgggtttggcttttctaatgttcat 115  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28370670 acagtcaccgagtagaagaagaagaagaatcaaattgaaagggaatgtttggagtgaaaagaaaatcaactttagtgggtttggcttttctaatgttcat 28370571  T
Q  116 gggtattgctgtttatttcagactttgggctattgactacaacatttcaatcgatgattctgagctcttaaggtacgttcct---------------tga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||    
T  28370570 gggtattgctgtttatttcagactttgggctattgactacaacatttcaatcgatgattctgagctcttaaggtacgttcctcttcttcccatcatttga 28370471  T
Q  201 tttgaaacacaaattgatttgaaacgaaattgtgatctttgagttcccatatctttatactgatttgaattcacactgctgagagaaatttttgttttgt 300  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||    
T  28370470 tttgaaacacaaattgattcgaaacgaaattgtgatctttgagttcccatatctttatactgatttgaattcacactgctgaaataaagttttgttttgt 28370371  T
Q  301 gattgatgggatgcttcagtctgtatttcaattataattacaatgactgccttagtctatgaatgtaacactgacatttcagattgaatgcgtgtctcgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28370370 gattgatgggatgcttcagtctgtatttcaattataattacaatgactgccttagtctatgaatgtaacactgacatttcagattgaatgcgtgtctggt 28370271  T
Q  401 gtccaccactgcctttgtctgactctgatactgacatgatgccgaaaaatccagttacattcaaatcaatgttgtcaatcgtgtactatagtgccgctat 500  Q
    |||||||||||||||||||| |      |||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  28370270 gtccaccactgcctttgtctca------tactcacatgatgccgaaaaatctagttacattcaaattaatgttgtcaatcgtgtactatagtgccgctat 28370177  T
Q  501 tgtgttagcggtcgcaaatagcggtagaaaaacagcgcagttgc------ggtgtcgtagctgtttaaccgtttaagtgacctaatattgtaagccacat 594  Q
    ||||||||| ||||||||||||||||||||||||||||||||||      |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28370176 tgtgttagctgtcgcaaatagcggtagaaaaacagcgcagttgcagttgcggtgccgtagctgtttaaccgtttaagtgacctaatattgtaagccacat 28370077  T
Q  595 gcttgatcgttcgattgtggccgctctctttcatcatgccctcgttcatcttgattacatttagaacttattttgatgggaaatgacagcnnnnnnnntt 694  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||    
T  28370076 gcttgattgttcgattgtggccgctctctttcatcatgccctcgttcatcttgattacatttataacttattttgatgggaaatgacagcaaaaaaaatt 28369977  T
Q  695 ggagagggggaaatgacgaagttgattataattaagtatgtttgtcccttccctttaatatcatgtatttttctatttttgagtatttatatatcttgtc 794  Q
    |||||||||||||||||||||||||||||||||||||| | |||     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28369976 ggagagggggaaatgacgaagttgattataattaagtacgattg-----tccctttaatatcatgtatttttctatttttgagtatttatatatcttgtc 28369882  T
Q  795 agaatttatgtttactttgtacattgtattttagtcttcacaatggtggccatcccgctatccgccatagcatctttagtggtcggtgctacgcgccact 894  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28369881 agaatttatgtttactttgtacattgtattttagtcttcacaatagtggccatcccgctatccgccatagcatctttagtggtcggtgctacgcgccact 28369782  T
Q  895 atatgagattaacaacatagcattgagtaacttctattttcttaaattattcactggatacgtgttagtgttctgttcggtgtcagtgtcttgtttgatg 994  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28369781 atatgagattaacaacatagcattgagtaacttctattttcttaaattattcactggatacgtgttagtgttctgttcggtgtcagtgtcttgtttggtg 28369682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 712 - 867
Target Start/End: Complemental strand, 1911473 - 1911311
Alignment:
Q  712 gaagttgattataatta---agtatgtttgtccctt--ccctttaatatcatgtatttttctatttttgagtatttatat--atcttgtcagaatttatg 804  Q
    |||||||||||||||||   |||||| |||||| ||  ||||| ||| |  ||||||||||||||||||||||| |||||  |||||||  |||||||||    
T  1911473 gaagttgattataattattaagtatggttgtccgttgtcccttcaattttgtgtatttttctatttttgagtatatatatgcatcttgttggaatttatg 1911374  T
Q  805 tttactttgtacattgtattttagtcttcacaatggtggccatcccgctatccgccatagcat 867  Q
    ||||||||||| | ||||||||||||||| |||| |  | ||| ||||||||||| |||||||    
T  1911373 tttactttgtaaaatgtattttagtcttcgcaatagcagtcattccgctatccgctatagcat 1911311  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 770 - 827
Target Start/End: Complemental strand, 33689618 - 33689561
Alignment:
Q  770 tttttgagtatttatatatcttgtcagaatttatgtttactttgtacattgtatttta 827  Q
    ||||||||||||||| ||| ||||  ||||||||||||||||| |||||  |||||||    
T  33689618 tttttgagtatttatgtatgttgttggaatttatgtttactttatacatgatatttta 33689561  T

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Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 758 - 838
Target Start/End: Complemental strand, 17692752 - 17692672
Alignment:
Q  758 tgtatttttctatttttgagtatttatatatcttgtcagaatttatgtttactttgtacattgtattttagtcttcacaat 838  Q
    ||||||||| || |||||||||||||| ||||||||  ||||||||||||| |||||| ||||| ||||||||||||||||    
T  17692752 tgtatttttgtacttttgagtatttatgtatcttgttggaatttatgtttagtttgtatattgttttttagtcttcacaat 17692672  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 744 - 834
Target Start/End: Original strand, 19189848 - 19189938
Alignment:
Q  744 tccctttaatatcatgtatttttctatttttgagtatttatatatcttgtcagaatttatgtttactttgtacattgtattttagtcttca 834  Q
    |||||||||| | || |||||||| | |||||||||||||| ||||||||  ||||||||| ||||| ||||| |||| ||||||||||||    
T  19189848 tccctttaattttatctatttttccacttttgagtatttatgtatcttgttggaatttatgcttactctgtacgttgttttttagtcttca 19189938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 743 - 859
Target Start/End: Complemental strand, 20798017 - 20797902
Alignment:
Q  743 ttccctttaatatcatgtatttttctatttttgagtatttatatatcttgtcagaatttatgtttactttgtacattgtattttagtcttcacaatggtg 842  Q
    ||||||||||| |  ||||||||||| ||||||||| ||||| |||  |||  |||||||||||  |||| |||| || ||||||||||||||||| | |    
T  20798017 ttccctttaattttgtgtatttttctgtttttgagtttttatgtatgctgttggaatttatgttccctttataca-tggattttagtcttcacaataggg 20797919  T
Q  843 gccatcccgctatccgc 859  Q
    | ||||| || ||||||    
T  20797918 gtcatcctgcaatccgc 20797902  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 649 - 683
Target Start/End: Complemental strand, 20798077 - 20798043
Alignment:
Q  649 ttacatttagaacttattttgatgggaaatgacag 683  Q
    ||||||||||| |||||||||||||||||||||||    
T  20798077 ttacatttagatcttattttgatgggaaatgacag 20798043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 802 - 863
Target Start/End: Original strand, 53787178 - 53787239
Alignment:
Q  802 atgtttactttgtacattgtattttagtcttcacaatggtggccatcccgctatccgccata 863  Q
    ||||| |||||||| ||||| |||||||||||||||| | || ||||  |||||||||||||    
T  53787178 atgttaactttgtatattgttttttagtcttcacaatagcggtcatcttgctatccgccata 53787239  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 744 - 837
Target Start/End: Complemental strand, 44864591 - 44864498
Alignment:
Q  744 tccctttaatatcatgtatttttctatttttgagtatttatatatcttgtcagaatttatgtttactttgtacattgtattttagtcttcacaa 837  Q
    |||||||||| |  ||||| ||||||||||||||||||||| |||  |    |||||||| ||||||||||||||||| |||||||||||||||    
T  44864591 tccctttaattttgtgtatatttctatttttgagtatttatgtattctcctggaatttatatttactttgtacattgttttttagtcttcacaa 44864498  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 640 - 682
Target Start/End: Complemental strand, 44864661 - 44864619
Alignment:
Q  640 tcatcttgattacatttagaacttattttgatgggaaatgaca 682  Q
    |||| ||||||||||||||||||||||||| |||||| |||||    
T  44864661 tcattttgattacatttagaacttattttggtgggaattgaca 44864619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 758 - 818
Target Start/End: Original strand, 6394875 - 6394935
Alignment:
Q  758 tgtatttttctatttttgagtatttatatatcttgtcagaatttatgtttactttgtacat 818  Q
    ||||||||||| ||||||||||||||| ||| ||||  |||||||||||||||||||||||    
T  6394875 tgtatttttctttttttgagtatttatgtatgttgttggaatttatgtttactttgtacat 6394935  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 767 - 838
Target Start/End: Complemental strand, 33578214 - 33578143
Alignment:
Q  767 ctatttttgagtatttatatatcttgtcagaatttatgtttactttgtacattgtattttagtcttcacaat 838  Q
    |||||||| ||||||||| ||||||||  ||||||||||||||||||| || || |||||||||||| ||||    
T  33578214 ctattttttagtatttatgtatcttgttggaatttatgtttactttgtccactgcattttagtcttcgcaat 33578143  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 645 - 682
Target Start/End: Complemental strand, 797596 - 797559
Alignment:
Q  645 ttgattacatttagaacttattttgatgggaaatgaca 682  Q
    ||||||||||||||||||||||||||||||||||||||    
T  797596 ttgattacatttagaacttattttgatgggaaatgaca 797559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 640 - 681
Target Start/End: Complemental strand, 35716947 - 35716906
Alignment:
Q  640 tcatcttgattacatttagaacttattttgatgggaaatgac 681  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  35716947 tcattttgattacatttacaacttattttgatgggaaatgac 35716906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 762 - 838
Target Start/End: Complemental strand, 35716293 - 35716218
Alignment:
Q  762 tttttctatttttgagtatttatatatcttgtcagaatttatgtttactttgtacattgtattttagtcttcacaat 838  Q
    |||||||||||| |||||||||| ||||   |  |||||| |||||||||||||| |||| ||||||||||||||||    
T  35716293 tttttctatttt-gagtatttatgtatcgatttggaatttttgtttactttgtacgttgttttttagtcttcacaat 35716218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 838
Target Start/End: Complemental strand, 797524 - 797457
Alignment:
Q  771 ttttgagtatttatatatcttgtcagaatttatgtttactttgtacattgtattttagtcttcacaat 838  Q
    |||||||||||| | ||| || |  ||||||||||| ||||| |||||||| ||||||||||||||||    
T  797524 ttttgagtatttttgtatgttattggaatttatgttcactttatacattgttttttagtcttcacaat 797457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 747 - 784
Target Start/End: Complemental strand, 2828806 - 2828769
Alignment:
Q  747 ctttaatatcatgtatttttctatttttgagtatttat 784  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  2828806 ctttaatgttatgtatttttctatttttgagtatttat 2828769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 758 - 817
Target Start/End: Original strand, 26029584 - 26029643
Alignment:
Q  758 tgtatttttctatttttgagtatttatatatcttgtcagaatttatgtttactttgtaca 817  Q
    |||||||||||||||| |||||||||| |||||| | |||| | ||||||||||||||||    
T  26029584 tgtatttttctattttagagtatttatgtatctttttagaactgatgtttactttgtaca 26029643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 640 - 682
Target Start/End: Complemental strand, 16623102 - 16623060
Alignment:
Q  640 tcatcttgattacatttagaacttattttgatgggaaatgaca 682  Q
    |||| |||||||||||||||||| ||||||||| |||||||||    
T  16623102 tcattttgattacatttagaactaattttgatgtgaaatgaca 16623060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 747 - 784
Target Start/End: Original strand, 21154209 - 21154246
Alignment:
Q  747 ctttaatatcatgtatttttctatttttgagtatttat 784  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  21154209 ctttaatttcatgtattttgctatttttgagtatttat 21154246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 645 - 679
Target Start/End: Original strand, 17340211 - 17340245
Alignment:
Q  645 ttgattacatttagaacttattttgatgggaaatg 679  Q
    |||||||||||||||||||||||||||||||||||    
T  17340211 ttgattacatttagaacttattttgatgggaaatg 17340245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0768 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 758 - 838
Target Start/End: Complemental strand, 2942 - 2862
Alignment:
Q  758 tgtatttttctatttttgagtatttatatatcttgtcagaatttatgtttactttgtacattgtattttagtcttcacaat 838  Q
    |||||||||||||||||||||||| || || |||||  | ||||||||||| ||||||   | | ||||||||||||||||    
T  2942 tgtatttttctatttttgagtattcatgtagcttgttgggatttatgtttagtttgtatgctattttttagtcttcacaat 2862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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