View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606_low_1 (Length: 667)
Name: NF5606_low_1
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 24480859 - 24481335
Alignment:
| Q |
1 |
gcatgtttatagaaagaataattttagttcaaaatgaaagtannnnnnnncaaaatttcatgaacatcatcaagattagcaacaacaaatacgaaactat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24480859 |
gcatgtttatagaaagaataattttagttcaaaatgaaagtattttttttcaaaatttcatgaacatcatcaagattagcaacaacaaatacgaaactat |
24480958 |
T |
|
| Q |
101 |
atatcagtatatgaaatttgataaaacagattaaaatacgcttctgaaataacacttatacaaaatgatacaacatggagtccaaagcatagctttatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24480959 |
atatcagtatatgaaatttgataaaacagattaaaatacgcttctgaaataacacttatacaaaatgatacaacatggagtccaaagcatagctttatta |
24481058 |
T |
|
| Q |
201 |
cagagcagacttttattactaatgaaaactttattgcaatacaaacaacacaacaatgatcatagtataactattggaaggagtcaaaatgcatatgtca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24481059 |
cagagcagacttttattactaatgaaaactttattgcaatacaaacaacacaacaatgatcatagtataactattggaaggagtcaaaatgcatatgtca |
24481158 |
T |
|
| Q |
301 |
tcaagcttaatacacagggggtggaggtgaactatattggtagggcttatatggtgtaggtggggatttgtaaacgtaaggaggagatttataaacatag |
400 |
Q |
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| T |
24481159 |
tcaagcttaatacacagggggtggaggtgaactatattggtagggcttatatggtgtaggtggggatttgtaaacgtaaggaggagatttataaacatag |
24481258 |
T |
|
| Q |
401 |
ggagcgggtggtggggatttatagatatatggtggagactcataaacatatggagggggtataggtttgtagtagta |
477 |
Q |
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| T |
24481259 |
ggagcgggtggtggggatttatagatatatggtggagactcataaacatatggagggggtataggtttgtagtagta |
24481335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 544 - 648
Target Start/End: Original strand, 24481402 - 24481506
Alignment:
| Q |
544 |
tttgtagacatattgtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtggcgacttgtataca |
643 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24481402 |
tttgtagacatattgtggaggaggaggtgattcgtaaacatatggaggaggtggcggtgacttgtagacatatggtggtggaggtggcgacttgtataca |
24481501 |
T |
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| Q |
644 |
tatgg |
648 |
Q |
| |
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||||| |
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| T |
24481502 |
tatgg |
24481506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 558 - 645
Target Start/End: Original strand, 24481922 - 24482009
Alignment:
| Q |
558 |
gtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtggcgacttgtatacata |
645 |
Q |
| |
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|||||||||| ||||| | ||| || |||||||||||||| || |||||||| |||||||| || || || || |||||||||||||| |
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| T |
24481922 |
gtggaggaggtggtgacttgtacacgtatggaggaggtgggggtgacttgtacacatatggaggaggtggcggtgacttgtatacata |
24482009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 618
Target Start/End: Original strand, 24481820 - 24481880
Alignment:
| Q |
558 |
gtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatgg |
618 |
Q |
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|||||||||| ||||| | ||| ||||||||||||||||| || |||||||| |||||||| |
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| T |
24481820 |
gtggaggaggtggtgacttgtacacatatggaggaggtgggggtgacttgtacacatatgg |
24481880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 629
Target Start/End: Original strand, 24482054 - 24482125
Alignment:
| Q |
558 |
gtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtg |
629 |
Q |
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|||||||||| ||||| | ||| || |||||||||||||| || |||||||| |||||||| ||||| |||| |
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| T |
24482054 |
gtggaggaggtggtgacttgtacacgtatggaggaggtgggggtgacttgtatacatatggaggtggcggtg |
24482125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 593 - 629
Target Start/End: Original strand, 41899998 - 41900034
Alignment:
| Q |
593 |
ggtggcggcgacttgtagacatatggtggtggaggtg |
629 |
Q |
| |
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||||| || |||||||||||||||||||||||||||| |
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| T |
41899998 |
ggtggtggggacttgtagacatatggtggtggaggtg |
41900034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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