View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5-6-63 (Length: 425)
Name: J5-6-63
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-6-63 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 133 - 425
Target Start/End: Complemental strand, 14414214 - 14413922
Alignment:
| Q |
133 |
caattgttaatgagcttcaacaaatatgtgcgaaccctgggacacctctttttagaaaccctgtagtgaatttcgatgagacaccagcgttgcttgacaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14414214 |
caattgttaatgagcttcaacaaatatgtgcgaaccctgggacacctctttttagaaaccctgtagtgaatttcgatgagacaccagcgttgcttgacaa |
14414115 |
T |
|
| Q |
233 |
cttgttttttaagaatatggtgacgaagaagaagacgcttttggttacagatgctcatttgtttaatgatcctaggacaattcctattgttgaagaactt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14414114 |
cttgttttttaagaatatggtgacgaagaagaagacgcttttggttacagatgctcatttgtttaatgatcctaggacaattcctattgttgaagaactt |
14414015 |
T |
|
| Q |
333 |
gctaaggataatggtttgtttcaaaagaagtttgctgaagctatggttaagatgggntcttaccatgttattacngggaatgatggtgaggtg |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| |
|
|
| T |
14414014 |
gctaaggataatggtttgtttcaaaagaagtttgctgaagctatggttaagatgggttcttacaatgttattactgggaatgatggtgaggtg |
14413922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 14413926 - 14413789
Alignment:
| Q |
1 |
aggtgaggaagacttgcaggtcaactaattaattaattaattattcttcattaatatatatgtgaaaattgtaatggtgtttaacacattttgtttatan |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14413926 |
aggtgaggaagacttgcaggtcaactaattaattaattaattattcttcattaatatatatgtgaaaattgtaatggtgtttaacacattttgtttatat |
14413827 |
T |
|
| Q |
101 |
nnnnnngttatcacagtgtaataataaatgatcaattg |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
14413826 |
ttttttgttatcacagtgtaataataaatgatcaattg |
14413789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University